University of Dundee

Plant Sciences 2009

Andrews, M., Lea, P. J., Raven, J. A. and Azevedo, R. A. (2009) Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155, 1-13

Andrews, M., Maule, H. G., Hodge, S., Cherrill, A. and Raven, J. A. (2009) Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for successful invasion of deciduous woodland. Plant Ecology & Diversity. 2, 145-153

Antunez-Lamas, M., Cabrera, E., Lopez-Solanilla, E., Solano, R., Gonzalez-Melendi, P., Chico, J. M., Toth, I., Birch, P., Pritchard, L., Liu, H. and Rodriguez-Palenzuela, P. (2009) Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues (vol 74, pg 662, 2009). Molecular Microbiology. 74, 1543-1543

Beardall, J., Allen, D., Bragg, J., Finkel, Z. V., Flynn, K. J., Quigg, A., Rees, T. A. V., Richardson, A. and Raven, J. A. (2009) Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181, 295-309

Birch, P. R. J., Armstrong, M., Bos, J., Boevink, P., Gilroy, E. M., Taylor, R. M., Wawra, S., Pritchard, L., Conti, L., Ewan, R., Whisson, S. C., van West, P., Sadanandom, A. and Kamoun, S. (2009) Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans. Journal of Experimental Botany. 60, 1133-1140

Chaerle, L., Lenk, S., Leinonen, I., Jones, H. G., Van Der Straeten, D. and Buschmann, C. (2009) Multi-sensor plant imaging: Towards the development of a stress-catalogue. Biotechnology Journal. 4, 1152-1167

Clark, E. L., Karley, A. J., Wishart, J., Daniell, T. J. and Hubbard, S. F. (2009) Using molecular phylogeny to investigate the bacteria associated with the cabbage aphid (Brevicoryne brassicae). Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology. 153A, S47-S47

Cockell, C. S., Kaltenegger, L. and Raven, J. A. (2009) Cryptic Photosynthesis-Extrasolar Planetary Oxygen Without a Surface Biological Signature. Astrobiology. 9, 623-636

Cockell, C. S., Leger, A., Fridlund, M., Herbst, T. M., Kaltenegger, L., Absil, O., Beichman, C., Benz, W., Blanc, M., Brack, A., Chelli, A., Colangeli, L., Cottin, H., du Foresto, F. C., Danchi, W. C., Defrere, D., den Herder, J. W., Eiroa, C., Greaves, J., Henning, T., Johnston, K. J., Jones, H., Labadie, L., Lammer, H., Launhardt, R., Lawson, P., Lay, O. P., LeDuigou, J. M., Liseau, R., Malbet, F., Martin, S. R., Mawet, D., Mourard, D., Moutou, C., Mugnier, L. M., Ollivier, M., Paresce, F., Quirrenbach, A., Rabbia, Y. D., Raven, J. A., Rottgering, H. J. A., Rouan, D., Santos, N. C., Selsis, F., Serabyn, E., Shibai, H., Tamura, M., Thiebaut, E., Westall, F. and White, G. J. (2009) Darwin-A Mission to Detect and Search for Life on Extrasolar Planets. Astrobiology. 9, 1-22

Cockell, C. S., Raven, J. A., Kaltenegger, L. and Logan, R. C. (2009) Planetary targets in the search for extrasolar oxygenic photosynthesis. Plant Ecology & Diversity. 2, 207-219

Cole, C., Sobala, A., Lu, C., Thatcher, S. R., Bowman, A., Brown, J. W. S., Green, P. J., Barton, G. J. and Hutvagner, G. (2009) Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA (Cold Spring Harbor). 15, 2147-2160

de Maayer, P., Venter, S., Birch, P., Toth, I. and Coutinho, T. (2009) The genome sequence of Pantoea ananatis. Phytopathology. 99, S27-S27

Dimier, C., Brunet, C., Geider, R. and Raven, J. (2009) Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54, 823-836

Granum, E., Roberts, K., Raven, J. A. and Leegood, R. C. (2009) PRIMARY CARBON AND NITROGEN METABOLIC GENE EXPRESSION IN THE DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE): DIEL PERIODICITY AND EFFECTS OF INORGANIC CARBON AND NITROGEN. Journal of Phycology. 45, 1083-1092

Haas, B. J., Kamoun, S., Zody, M. C., Jiang, R. H. Y., Handsaker, R. E., Cano, L. M., Grabherr, M., Kodira, C. D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T. O., Ah-Fong, A. M. V., Alvarado, L., Anderson, V. L., Armstrong, M. R., Avrova, A., Baxter, L., Beynon, J., Boevink, P. C., Bollmann, S. R., Bos, J. I. B., Bulone, V., Cai, G. H., Cakir, C., Carrington, J. C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M. A., Fugelstad, J., Gilroy, E. M., Gnerre, S., Green, P. J., Grenville-Briggs, L. J., Griffith, J., Grunwald, N. J., Horn, K., Horner, N. R., Hu, C. H., Huitema, E., Jeong, D. H., Jones, A. M. E., Jones, J. D. G., Jones, R. W., Karlsson, E. K., Kunjeti, S. G., Lamour, K., Liu, Z. Y., Ma, L. J., MacLean, D., Chibucos, M. C., McDonald, H., McWalters, J., Meijer, H. J. G., Morgan, W., Morris, P. F., Munro, C. A., O'Neill, K., Ospina-Giraldo, M., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q. H., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D. C., Schumann, U. D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D. J., Sykes, S., Thines, M., van de Vondervoort, P. J. I., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S. G., Fry, W., Meyers, B. C., van West, P., Ristaino, J., Govers, F., Birch, P. R. J., Whisson, S. C., Judelson, H. S. and Nusbaum, C. (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461, 393-398

Hein, I., Gilroy, E. M., Armstrong, M. R. and Birch, P. R. J. (2009) The zig-zag-zig in oomycete-plant interactions. Molecular Plant Pathology. 10, 547-562

Jones, H. G., Serraj, R., Loveys, B. R., Xiong, L. Z., Wheaton, A. and Price, A. H. (2009) Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field. Functional Plant Biology. 36, 978-989

Kiaer, L. P., Felber, F., Flavell, A., Guadagnuolo, R., Guiatti, D., Hauser, T. P., Olivieri, A. M., Scotti, I., Syed, N., Vischi, M., van de Wiel, C. and Jorgensen, R. B. (2009) Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L. Genetic Resources and Crop Evolution. 56, 405-419

Kim, S. H., Koroleva, O. A., Lewandowska, D., Pendle, A. F., Clark, G. P., Simpson, C. G., Shaw, P. J. and Brown, J. W. S. (2009) Aberrant mRNA Transcripts and the Nonsense-Mediated Decay Proteins UPF2 and UPF3 Are Enriched in the Arabidopsis Nucleolus. Plant Cell. 21, 2045-2057

Koroleva, O. A., Brown, J. W. S. and Shaw, P. J. (2009) Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress. Plant Signal Behav. 4, 1148-1151

Koroleva, O. A., Calder, G., Pendle, A. F., Kim, S. H., Lewandowska, D., Simpson, C. G., Jones, I. M., Brown, J. W. S. and Shaw, P. J. (2009) Dynamic Behavior of Arabidopsis eIF4A-III, Putative Core Protein of Exon Junction Complex: Fast Relocation to Nucleolus and Splicing Speckles under Hypoxia. Plant Cell. 21, 1592-1606

Lokossou, A. A., Park, T. H., van Arkel, G., Arens, M., Ruyter-Spira, C., Morales, J., Whisson, S. C., Birch, P. R. J., Visser, R. G. F., Jacobsen, E. and van der Vossen, E. A. G. (2009) Exploiting Knowledge of R/Avr Genes to Rapidly Clone a New LZ-NBS-LRR Family of Late Blight Resistance Genes from Potato Linkage Group IV. Molecular Plant-Microbe Interactions. 22, 630-641

Maberly, S. C., Ball, L. A., Raven, J. A. and Sultemeyer, D. (2009) INORGANIC CARBON ACQUISITION BY CHRYSOPHYTES. Journal of Phycology. 45, 1052-1061

McLellan, H., Gilroy, E. M., Yun, B. W., Birch, P. R. J. and Loake, G. J. (2009) Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence. New Phytologist. 183, 408-418

Moragues, M., Comadran, J., Waugh, R., Milne, I., Flavell, A. J. and Russell, J. R. (2009) Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data. Theoretical and Applied Genetics. 120, 1525-1534

Pritchard, L., Liu, H., Booth, C., Douglas, E., Francois, P., Schrenzel, J., Hedley, P. E., Birch, P. R. J. and Toth, I. K. (2009) Microarray Comparative Genomic Hybridisation Analysis Incorporating Genomic Organisation, and Application to Enterobacterial Plant Pathogens. Plos Computational Biology. 5
Raven, J. A. (2009) Contributions of anoxygenic and oxygenic phototrophy and chemolithotrophy to carbon and oxygen fluxes in aquatic environments. Aquatic Microbial Ecology. 56, 177-192

Raven, J. A. (2009) Functional evolution of photochemical energy transformations in oxygen-producing organisms. Functional Plant Biology. 36, 505-515

Raven, J. A. (2009) Horsetails get the wind up. New Phytologist. 184, 6-9

Raven, J. A., Beardall, J., Flynn, K. J. and Maberly, S. C. (2009) Phagotrophy in the origins of photosynthesis in eukaryotes and as a complementary mode of nutrition in phototrophs: relation to Darwin's insectivorous plants. Journal of Experimental Botany. 60, 3975-3987

Raven, J. A. and Giordano, M. (2009) Biomineralization by photosynthetic organisms: Evidence of coevolution of the organisms and their environment? Geobiology. 7, 140-154

Schornack, S., Huitema, E., Cano, L. M., Bozkurt, T. O., Oliva, R., van Damme, M., Schwizer, S., Raffaele, S., Chaparro-Garcia, A., Farrer, R., Segretin, M. E., Bos, J., Haas, B. J., Zody, M. C., Nusbaum, C., Win, J., Thines, M. and Kamoun, S. (2009) Ten things to know about oomycete effectors. Molecular Plant Pathology. 10, 795-803
33 Terzi, L. C. and Simpson, G. G. (2009) Arabidopsis RNA immunoprecipitation. Plant Journal. 59, 163-168

Vida, G., Gal, M., Uhrin, A., Veisz, O., Syed, N. H., Flavell, A. J., Wang, Z. L. and Bedo, Z. (2009) Molecular markers for the identification of resistance genes and marker-assisted selection in breeding wheat for leaf rust resistance. Euphytica. 170, 67-76

Woodward, F. I., Bardgett, R. D., Raven, J. A. and Hetherington, A. M. (2009) Biological Approaches to Global Environment Change Mitigation and Remediation. Current Biology. 19, R615-R623

Wouters, J., Raven, J. A., Minnhagen, S. and Janson, S. (2009) The luggage hypothesis: Comparisons of two phototrophic hosts with nitrogen-fixing cyanobacteria and implications for analogous life strategies for kleptoplastids/secondary symbiosis in dinoflagellates. Symbiosis. 49, 61-70