University of Dundee

2019

Bensaddek D, Nicolas A, Lamond AI. 2019. Signal enhanced proteomics: a biological perspective on dissecting the functional organisation of cell proteomes. Current Opinion in Chemical Biology. 48:114-122. https://doi.org/10.1016/j.cbpa.2018.10.011

Besson S, Leigh R, Linkert M, Allan C, Burel J-M, Carroll M, Gault D, Gozim R, Li S, Lindner D, Moore J, Moore W, Walczysko P, Wong F, Swedlow J. 2019. Bringing Open Data to Whole Slide Imaging. In Proceedings of the 15th European Congress on Digital Pathology. Springer . (Lecture Notes in Computer Science).

Booth AJR, Yue Z, Eykelenboom JK, Stiff T, Luxton GWG, Hochegger H, Tanaka T. 2019. Contractile acto-myosin network on nuclear envelope remnants positions human chromosomes for mitosis. eLife. 8. https://doi.org/10.7554/eLife.46902

Branigan E, Plechanovová A, Hay RT. 2019. Methods to analyze STUbL activity. In Methods in Enzymology. Elsevier. pp. 257-280. (Methods in Enzymology). https://doi.org/10.1016/bs.mie.2018.11.005

Bueren-Calabuig J, Bage M, Cowling V, Pisliakov A. 2019. Mechanism of allosteric activation of human mRNA cap methyltransferase (RNMT) by RAM: Insights from accelerated molecular dynamics simulations. Nucleic Acids Research.

Cowling V. 2019. CAPAM: the mRNA cap adenosine N6 methyltransferase. Trends in Biochemical Sciences. 44(3):183-185. https://doi.org/10.1016/j.tibs.2019.01.002

Dunn S, Lombardi O, Lukoszek R, Cowling V. 2019. Oncogenic PIK3CA mutations increase dependency on the mRNA cap methyltransferase, RNMT, in breast cancer cells. Open Biology. 9(4):1-15. https://doi.org/10.1098/rsob.190052

Elias MS, Wright SC, Remenyi J, Abbott JC, Bray SE, Cole C, Edwards S, Gierlinski M, Glok M, McGrath JA, Nicholson WV, Paternoster L, Prescott AR, Have ST, Whitfield PD, Lamond AI, Brown SJ. 2019. EMSY expression affects multiple components of skin barrier with relevance to atopic dermatitis. Journal of Allergy and Clinical Immunology. https://doi.org/10.1016/j.jaci.2019.05.024

Eykelenboom J, Gierlinski M, Yue Z, Hegarat N, Pollard H, Fukagawa T, Hochegger H, Tanaka T. 2019. Live imaging of marked chromosome regions reveals their dynamic resolution and compaction in mitosis. Journal of Cell Biology. 218(5):1531-1552. https://doi.org/10.1083/jcb.201807125

Fang W, Sanz AB, Galan Bartual S, Wang B, Ferenbach A, Farkaš V, Hurtado-Guerrero R, Arroyo J, van Aalten D. 2019. Mechanisms of redundancy and specificity of the Aspergillus fumigatus Crh transglycosylases. Nature Communications. 10(1):1-10. https://doi.org/10.1038/s41467-019-09674-0

Farnaby W, Koegl M, Roy MJ, Whitworth C, Diers E, Trainor N, Zollman D, Steurer S, Karolyi-Oezguer J, Riedmueller C, Gmaschitz T, Wachter J, Dank C, Galant M, Sharps B, Rumpel K, Traxler E, Gerstberger T, Schnitzer R, Petermann O, Greb P, Weinstabl H, Bader G, Zoephel A, Weiss-Puxbaum A, Ehrenhöfer-Wölfer K, Wöhrle S, Boehmelt G, Rinnenthal J, Arnhof H, Wiechens N, Wu M-Y, Owen-Hughes T, Ettmayer P, Pearson M, McConnell DB, Ciulli A. 2019. BAF complex vulnerabilities in cancer demonstrated via structure-based PROTAC design. Nature Chemical Biology. 15(7):672-680. https://doi.org/10.1038/s41589-019-0294-6

Froussios K, Schurch N, Mackinnon K, Gierlinski M, Duc C, Simpson G, Barton G. 2019. How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in A. thaliana. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz089

Froussios K, Mourao K, Simpson G, Barton G, Schurch N. 2019. Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq . F1000 Research. 8:1-20. https://doi.org/10.12688/f1000research.17916.1

García-Rodríguez LJ, Kasciukovic T, Denninger V, Tanaka T. 2019. Aurora B–INCENP localization at centromeres/inner kinetochores is required for chromosome bi-orientation in budding yeast. Current Biology. 29:1536-1544.e4. https://doi.org/10.1016/j.cub.2019.03.051

Mourao K, Schurch N, Lukoszek R, Froussios K, Mackinnon K, Duc C, Simpson G, Barton G. 2019. Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA. F1000 Research. 8. https://doi.org/10.1101/425900, https://doi.org/10.12688/f1000research.18952.1

Matera AG, Raimer AC, Schmidt CA, Kelly JA, Droby GN, Baillat D, Ten Have S, Lamond AI, Wagner EJ, Gray KM. 2019. Composition of the Survival Motor Neuron (SMN) complex in Drosophila melanogaster. G3 : Genes, Genomes, Genetics. 9(2):491-503. https://doi.org/10.1534/g3.118.200874

McGloin D, Swedlow J, Zdankowski P. 2019. Full volume super-resolution imaging of thick mitotic spindle using 3D AO STED microscope. Biomedical Optics Express. 10(4):1999-2009. https://doi.org/10.1364/BOE.10.001999

Pelisch F, Bel Borja L, Jaffray E, Hay R. 2019. Sumoylation regulates protein dynamics during meiotic chromosome segregation in C. elegans oocytes. Journal of Cell Science. https://doi.org/10.1242/jcs.232330

Pravata V, Muha V, Gundogdu M, Ferenbach A, Kakade P, Vandadi V, Wilmes AC, Borodkin V, Joss S, Stavridis M, van Aalten D. 2019. O-GlcNAc transferase catalytic deficiency in twins with X-linked intellectual disability. Proceedings of the National Academy of Sciences.

Rabl J, Bunker RD, Schenk AD, Cavadini S, Gill ME, Abdulrahman W, Andrés-Pons A, Luijsterburg MS, Ibrahim AFM, Branigan E, Aguirre JD, Marceau AH, Guérillon C, Bouwmeester T, Hassiepen U, Peters AHFM, Renatus M, Gelman L, Rubin SM, Mailand N, van Attikum H, Hay RT, Thomä NH. 2019. Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation. Molecular Cell. https://doi.org/10.1016/j.molcel.2019.06.002

Rasmussen KD, Berest I, Keβler S, Nishimura K, Simón-Carrasco L, Vassiliou GS, Pedersen MT, Christensen J, Zaugg JB, Helin K. 2019. TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells. Genome Research. 29(4):564-575. https://doi.org/10.1101/gr.239277.118

Sinclair LV, Howden A, Brenes Murillo A, Spinelli L, Hukelmann J, Macintyre AN, Liu X, Thomson S, Taylor P, Rathmell JC, Locasale JW, Lamond A, Cantrell DA. 2019. Antigen receptor control of methionine metabolism in T cells. eLife. 8. https://doi.org/10.7554/eLife.44210

Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC. 2019. Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation. iScience. 16:206-217. https://doi.org/10.1016/j.isci.2019.05.028