University of Dundee

Plant Sciences 2018

Andrews M, Condron LM, Kemp PD, Topping JF, Lindsey K, Hodge S, Raven JA. 2018. Elevated CO2 effects on nitrogen assimilation and growth of C3 vascular plants are similar regardless of N-form assimilated. Journal of Experimental Botany.

Amaro TMM, Thilliez GJA, Mcleod RA, Huitema E. 2018. Random mutagenesis screen shows that Phytophthora capsici CRN83_152 mediated cell death is not required for its virulence function(s). Molecular Plant Pathology. 19(5):1114-1126.

Armstrong M, Vossen JH, Lim JT-Y, Hutten RCB, Xu J, Strachan SM, Harrower B, Champouret N, Gilroy EM, Hein I. 2018. Tracking disease resistance deployment in potato breeding by enrichment sequencing. Plant Biotechnology Journal.

Baker K, Stephen G, Strachan S, Armstrong M, Hein I. 2018. BLASTmap: A Shiny-Based Application to Visualize BLAST Results as Interactive Heat Maps and a Tool to Design Gene-Specific Baits for Bespoke Target Enrichment Sequencing. Ma W, Wolpert T, editors. In Plant Pathogenic Fungi and Oomycetes. New York: Humana Press. pp. 199-206. (Methods in Molecular Biology).

Bayer M, Morris JA, Booth C, Booth A, Uzrek N, Russell JR, Waugh R, Hedley PE. 2019. Exome Capture for Variant Discovery and Analysis in Barley. Harwood WA, editor. In Barley: Methods in Molecular Biology. New York: Humana Press. pp. 283-310. (Methods in Molecular Biology (Clifton, N.J.)).

Bulgarelli D. 2018. How manipulating the plant microbiome could improve agriculture. Scientist. 32(2).

Chen X, Lewandowska D, Armstrong MR, Baker K, Lim JT-Y, Bayer M, Harrower B, McLean K, Jupe F, Witek K, Lees AK, Jones JDG, Bryan GJ, Hein I. 2018. Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies. Theoretical and Applied Genetics.

Coulter M, Büttner B, Hofmann K, Bayer M, Ramsay L, Schweizer G, Waugh R, Looseley ME, Avrova A. 2018. Characterisation of barley resistance to rhynchosporium on chromosome 6HS. Theoretical and Applied Genetics.

Cowan GH, Roberts AG, Jones S, Kumar P, Kalyandurg PB, Gil JF, Savenkov EI, Hemsley P, Torrance L. 2018. Potato mop-top virus co-opts the stress sensor HIPP26 for long-distance movement. Plant Physiology. 176(2):1-52.

Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C. 2018. RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnology Journal.

De Clerck O, Kao S-M, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano G, Charrier B, Clewes R, Del Cortona A, D'Hondt S, Fernandez-Pozo N, Gachon CM, Hanikenne M, Lattermann L, Leliaert F, Liu X, Maggs CA, Popper ZA, Raven JA, Van Bel M, Wilhelmsson PKI, Bhattacharya D, Coates JC, Rensing SA, Van Der Straeten D, Vardi A, Sterck L, Vandepoele K, Van de Peer Y, Wichard T, Bothwell JH. 2018. Insights into the Evolution of Multicellularity from the Sea Lettuce Genome. Current Biology. 28(18):2921-2933.e5.

De la Fuente Cantó C, Russell J, Hackett CA, Booth A, Dancey S, George TS, Waugh R. 2018. Genetic dissection of quantitative and qualitative traits using a minimum set of barley Recombinant Chromosome Substitution Lines. Plant biology. 18(1):340.

Giordano M, Olivieri C, Ratti S, Norici A, Raven JA, Knoll AH. 2018. A tale of two eras: Phytoplankton composition influenced by oceanic paleochemistry. Geobiology. 16(5):498-506.

He Q, Naqvi S, McLellan H, Boevink P, Champouret N, Hein I, Birch P. 2018. Plant pathogen effector utilizes host susceptibility factor NRL1 to degrade the immune regulator SWAP70. Proceedings of the National Academy of Sciences. 115(33):E7834-E7843.

He Q, McLellan H, Hughes RK, Boevink PC, Armstrong M, Lu Y, Banfield MJ, Tian Z, Birch PRJ. 2018. Phytophthora infestans effector SFI3 targets potato UBK to suppress early immune transcriptional responses. New Phytologist.

Herzig P, Maurer A, Draba V, Sharma R, Draicchio F, Bull H, Milne L, Thomas WTB, Flavell AJ, Pillen K. 2018. Contrasting genetic regulation of plant development in two European environments revealed by wild barley nested association mapping. Journal of Experimental Botany. 69(7):1517-1531.

Hurst C, Turnbull D, Myles S, Leslie K, Keinath NF, Hemsley P. 2018. Variable effects of C-terminal tags on FLS2 function: not all epitope tags are created equal. Plant Physiology. 177:522-531.

James AB, Calixto CPG, Tzioutziou NA, Guo W, Zhang R, Simpson CG, Jiang W, Nimmo GA, Brown JWS, Nimmo HG. 2018. How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY). Plant, Cell & Environment.

Jiang R, Li J, Tian Z, Du J, Armstrong M, Baker K, Lim JT-Y, Vossen JH, He H, Portal L, Zhou J, Bonierbale M, Hein I, Lindqvist-Kreuze H, Xie C. 2018. Potato late blight field resistance from QTL dPI09c is conferred by the NB-LRR gene R8. Journal of Experimental Botany. 69(7):1545-1555.

Jones HG, Hutchinson PA, May T, Jamali H, Deery DM. 2018. A practical method using a network of fixed infrared sensors for estimating crop canopy conductance and evaporation rate. Biosystems Engineering. 165:59-69.

Jones HG. 2018. Opportunities and pitfalls in the use of thermal sensing for monitoring water stress and transpiration. In International Symposium on Sensing Plant Water Status - Methods and Applications in Horticultural Science. International Society for Horticultural Science . pp. 31-44. (Acta Horticulturae).

Jones HG. 2018. Thermal Imaging and Infrared Sensing in Plant Ecophysiology. Sánchez-Moreiras AM, Reigosa MJ, editors. In Advances in Plant Ecophysiology Techniques. Springer International Publishing. pp. 135-151.

Jouet A, Saunders DGO, McMullan M, Ward B, Furzer O, Jupe F, Cevik V, Hein I, Thilliez GJA, Holub E, Oosterhout CV, Jones JDG. 2018. Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist.

Kim M, Brodersen KE, Szabó M, Larkum AWD, Raven JA, Ralph PJ, Pernice M. 2018. Low oxygen affects photophysiology and the level of expression of two-carbon metabolism genes in the seagrass Zostera muelleri. Photosynthesis Research. 136(2):147-160.

Larkum AWD, Ritchie RJ, Raven JA. 2018. Living off the Sun: chlorophylls, bacteriochlorophylls and rhodopsins. Photosynthetica. 56(1):11-43.

Larkum AWD, Pernice M, Schliep M, Davey P, Szabo M, Raven JA, Lichtenberg M, Brodersen KE, Ralph PJ. 2018. Photosynthesis and Metabolism of Seagrasses. Larkum AWD, Kendrick GA, Ralph PJ, editors. In Seagrasses of Australia: Structure, Ecology and Conservation. Springer International Publishing. pp. 315-342.

Lavoie M, Duval JFL, Raven JA, Maps F, Béjaoui B, Kieber DJ, Vincent WF. 2018. Carbonate Disequilibrium in the External Boundary Layer of Freshwater Chrysophytes: Implications for Contaminant Uptake. Environmental Science & Technology. 52(16):9403-9411.

Leybourne D, Bos J, Valentine TA, Karley A. 2018. The price of protection: a defensive endosymbiont impairs nymph growth in the bird cherry‐oat aphid, Rhopalosiphum padi. Insect Science.

Looseley ME, Griffe LL, Büttner B, Wright KM, Middlefell-Williams J, Bull H, Shaw PD, Macaulay M, Booth A, Schweizer G, Russell JR, Waugh R, Thomas WTB, Avrova A. 2018. Resistance to Rhynchosporium commune in a collection of European spring barley germplasm. Theoretical and Applied Genetics. 131(12):2513-2528.

Mittmann S, Arrieta M, Ramsay L, Waugh R, Colas I. 2019. Preparation of Barley Pollen Mother Cells for Confocal and Super Resolution Microscopy. Harwood WA, editor. In Barley: Methods in Molecular Biology. New York: Humana Press. pp. 167-179. (Methods in Molecular Biology (Clifton, N.J.)).

Morera-Margarit P, Bulgarelli D, Pope T, Graham R, Mitchell C, Karley AJ. 2018. The bacterial community associated with adult vine weevil, Otiorhynchus sulcatus Fabricius, UK populations growing on strawberry (Fragaria x ananassa), is dominated by Candidatus Nardonella. Entomologia Experimentalis et Applicata.

Murphy F, He Q, Armstrong M, Giuliani LM, Boevink PC, Zhang W, Tian Z, Birch PRJ, Gilroy EM. 2018. Potato MAP3K StVIK is required for Phytophthora infestans RXLR Effector Pi17316 to promote disease. Plant Physiology.

Okagaki RJ, Haaning A, Bilgic H, Heinen S, Druka A, Bayer M, Waugh R, Muehlbauer GJ. 2018. ELIGULUM-A regulates lateral branch and leaf development in barley. Plant Physiology.

Pham J, Stam R, Heredia VM, Csukai M, Huitema E. 2018. An NMRA-like protein regulates gene expression in Phytophthora capsici to drive the infection cycle on tomato. Molecular Plant - Microbe Interactions. 31(6):665-677.

Pietrangelo L, Bucci A, Maiuro L, Bulgarelli D, Naclerio G. 2018. Unraveling the Composition of the Root-Associated Bacterial Microbiota of Phragmites australis and Typha latifolia. Frontiers in Microbiology. 9:1-13.

Prade VM, Gundlach H, Twardziok S, Chapman B, Tan C, Langridge P, Schulman AH, Stein N, Waugh R, Zhang G, Platzer M, Li C, Spannagl M, Mayer KFX. 2018. The Pseudogenes of Barley. Plant Journal. 93(3):502-514.

Raven JA. 2018. Evolution and palaeophysiology of the vascular system and other means of long-distance transport. Philosophical Transactions of the Royal Society B: Biological Sciences. 373(1739):1-14.

Raven JA, Lambers H, Smith SE, Westoby M. 2018. Costs of acquiring phosphorus by vascular land plants: patterns and implications for plant coexistence. New Phytologist. 217(4):1420-1427.

Raven JA. 2018. The Potential effect of Low Cell Osmolarity on Cell Function through decreased concentration of enzyme substrates. Journal of Experimental Botany.

Raven JA. 2018. How long have photosynthetic organisms been aggregating soils?. New Phytologist. 219(4):1139-1141.

Raven JA, Beardall J. 2018. Opportunities for, and limitations on, the functioning of very small cells, illustrated by the Chlorophyta and charophycean Streptophyta. Perspectives in Phycology. 5(1):1-12.

Raven J. 2018. Blue carbon: past, present and future, with emphasis on macroalgae. Biology Letters. 14(10).

Sharma R, Draicchio F, Bull H, Herzig P, Maurer A, Pillen K, Thomas WTB, Flavell AJ. 2018. Genome-wide association of yield traits in a nested association mapping population of barley reveals new gene diversity for future breeding. Journal of Experimental Botany. 69(16):3811-3822.

Simpson CG, Fuller J, Rapazote-Flores P, Mayer CD, Calixto CPG, Milne L, Hedley PE, Booth C, Waugh R, Brown JWS. 2019. High-Resolution RT-PCR Analysis of Alternative Barley Transcripts. Harwood WA, editor. In Barley: Methods in Molecular Biology. New York: Humana Press. pp. 269-281. (Methods in Molecular Biology (Clifton, N.J.)).

Thilliez GJA, Armstrong M, Lim JT-Y, Baker K, Jouet A, Ward B, Oosterhout CV, Jones JDG, Huitema E, Birch P, Hein I. 2018. Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist.

Thordal-Christensen H, Birch PRJ, Spanu PD, Panstruga R. 2018. Why did filamentous plant pathogens evolve the potential to secrete hundreds of effectors to enable disease?. Molecular Plant Pathology. 19(4):781-785.

Thorpe P, Escudero-Martinez CM, Cock PJA, Eves-van den Akker S, Bos JIB. 2018. Shared transcriptional control and disparate gain and loss of aphid parasitism genes. Genome Biology and Evolution. 10(10):2716-2733.

Wang S, Welsh L, Thorpe P, Whisson S, Boevink P, Birch P. 2018. The Phytophthora infestans haustorium is a site for secretion of diverse classes of infection-associated proteins. MBio. 9(4):e01216-e01218.

Wang S, McLellan H, Bukharova T, He Q, Murphy F, Shi J, Sun S, van Weymers P, Ren Y, Thilliez G, Wang H, Chen X, Engelhardt S, Vleeshouwers V, Gilroy EM, Whisson SC, Hein I, Wang X, Tian Z, Birch PRJ, Boevink PC. 2018. Phytophthora infestans RXLR effectors act in concert at diverse subcellular localisations to enhance host colonisation. Journal of Experimental Botany.

Wang H, He H, Qi Y, McLellan H, Tian Z, Birch PRJ, Tian Z. 2018. The oomycete microbe-associated molecular pattern Pep-13 triggers SERK3/BAK1-independent plant immunity. Plant Cell Reports.

Xu X, Sharma R, Tondelli A, Russell J, Comadran J, Pillen K, Schnaithmann F, Kilian B, Cattivelli L, Thomas WTB, Flavell AJ. 2018. Genome-wide association analysis of grain yield-associated traits in a pan-European barley cultivar collection. Plant Genome. 11(1):1-11.

Zavřel T, Szabó M, Tamburic B, Evenhuis C, Kuzhiumparambil U, Literáková P, Larkum AWD, Raven JA, Červený J, Ralph PJ. 2018. Effect of carbon limitation on photosynthetic electron transport in Nannochloropsis oculata. Journal of Photochemistry and Photobiology B: Biology. 181:31-43.

Zheng X, Wagener N, McLellan H, Boevink PC, Hua C, Birch PRJ, Brunner F. 2018. Phytophthora infestans RXLR effector SFI5 requires association with calmodulin for PTI/MTI suppressing activity. New Phytologist. 219(4):1433-1446.

Zwirek M, Waugh R, McKim SM. 2018. Interaction between row-type genes in barley controls meristem determinacy and reveals novel routes to improved grain. New Phytologist.