University of Dundee

Plant Sciences 2008

Tilston, E.L., Halpin, C., and Hopkins, D.W. (2008) Decomposition of tobacco roots with modified phenylpropanoid content by fungi with contrasting lignocellulose degradation strategies. FEMS Microbiology Letters.

Tilston, E.L, Halpin, C., and Hopkins, D.W. (2008) Tissue culture propagation alters plant–microbe interactions in tobacco rhizosphere. Biol Fertil Soils.

Douglas, E., and Halpin, C. (in press) “Gene Stacking”. In: Molecular Techniques in Crop Improvement, 2nd edition, SM Jain and DS Brar Eds. Springer

Smýkal, P., Hýbl, M., Corander, J., Jarkovský, J., Flavell, A.J., and Griga, M. (2008) Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics.

Lyons, M., Milne, L., Rostoks, N., Waugh, R., and Flavell, A.J. (2008) Isolation and analysis of novel miniature inverted repeat transposable elements from the barley genome. Molecular genetics Genomics 280: 275-285

Kiær, L.P., Felber, F., Flavell, A.J., Guadagnuolo, R., Hauser, T.P., Olivieri, A.M., Scotti, I., Syed, N.H., Vischi, M., van de Wiel, C., and Jørgensen, R.B. (2008) Gene flow and genetic variation in wild and cultivated chicory Genetic Resources and Crop Evolution (in press)

Nwankwo, D., Flavell, A.J., Waugh, R., Ramsay, L., Shaw, P., and Marshall, D. (2008) The Genotype Visualization Tool (GVT) for the visualization and analysis of genotypic diversity Bioinformatics (submitted)

Hooftman, D.A.P., Flavell, A.J., Jansen, H., den Nijs, H., Syed, N.H., Sørensen, A.P., Orozco-ter Wengel., P. and van de Wiel, C. (2008) Field Selection Determines the Genomic Structure of Hybrids between Wild and Cultivated Lettuce. New Phytologist (revised version submitted)

Terzi, L.C., and Simpson, G.G. (2008) Regulation of flowering time by RNA processing Curr Top Microbiol Immunol 326: 201-18

Guilioni, L., Jones, H.G., Leinonen, I., and Lhomme, J.P. (2008) About the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology, in press

Jones, H.G. (2008) Irrigation Scheduling – Comparison of Soil, Plant and Atmosphere Monitoring Approaches Acta Horticulturae 792, 391-403.

Loveys, B.R., Jones, H.G., Theobald, J.C. and McCarthy, M.G. (2008) An assessment of plant-based measures of grapevine performance as irrigation-scheduling tools. Acta Horticulturae 792, 421-427

Kim, S.H., Koroleva, O.A., Lewandowska, D., Pendle, A.F., Clark, G.P., Shaw, P.J. and Brown, J.W.S. (2008) Aberrant mRNA transcripts – substrates of nonsense-mediated decay (NMD) – and the NMD proteins UPF2 and UPF3 accumulate in the Arabidopsis nucleolus. EMBO J.

Koroleva, O., Calder, G., Pendle, A.F., Kim, S.H., Lewandowska, D., Brown, J.W.S. and Shaw, P. J. (2008) Dynamic behaviour of the core exon junction complex protein, eIF4AIII: fast relocation to the nucleolus and splicing speckles under stress. Plant Cell, under revision.

Simpson, C.G., Lewandowska, D., Fuller, J., Maronova, M., Kalyna, M., Davidson, D., McNicol, J., Raczynska, D., Jarmolowski, A., Barta, A. and Brown, J.W.S. (2008) Alternative splicing in plants. Biochem. Soc. Trans. 508-510.

Canetta, E., Kim, S. H., Kalinina, N.O., Shaw, J., Adya, A.K., Gillespie, T. Brown, J.W.S. and Taliansky, M. (2008) A plant virus movement protein forms ring-like complexes with the major nucleolar protein, fibrillarin, in vitro. J. Mol. Biol. 376, 932-937.

Simpson, C.G., Fuller, J., Maronova, M., Kalyna, M., Davidson, D., McNicol, J., Barta, A. and Brown, J.W.S. (2008) Monitoring changes in alternative pre-mRNA splicing in multiple gene transcripts. Plant Journal 53, 1035–1048.

Brown, J.W.S., Marshall, D.F. and Echeverria, M. (2008) Intronic non-coding RNAs and splicing. Trends in Plant Sciences 13, 335-342

Simpson, C.G. and Brown, J.W.S. (2008) Plant U12-dependent (AT-AC) introns. In: "Nuclear pre-mRNA processing in plants". Ed. Reddy, A. S. N. pp 61-82.

Brown, J.W.S. and Shaw, P.J. (2008) The plant nucleolus and mRNA biogenesis. In: "Nuclear pre-mRNA processing in plants". Ed. Reddy, A. S. N. pp 291-311.

Raven, J.A., Giordano, M., and Beardall, J. (2008) Insights into the evolution of CCMs from comparison with other resource acquisition and assimilation processes. Physiologia Plantarum 133: 4-14

Lambers, H., Raven, J.A., Shaver, G., and Smith, S.E. (2008) Plant nutrient-acquisition strategies change with soil age. Trends in Ecology and Evolution 23: 95-103.

Kühn, S.F., and Raven, J.A. (2008) Photosynthetic oscillation in individual cells in the marine diatom Coscinodiscus wailesii (Bacillariophyceae) revealed by microsensor measurements. Photosynthesis Research 95: 37-44.

Jones, M.R., Raven, J.A., Leith, I.D., Cape, J.N., Smith, R.I., and Fowler, D. (2008) Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology 148: 893-901

Kilminster, K.L., Walker, D.I., Thompson, P.A., Raven, J.A. (2008) Changes in growth, internode-distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology Progress Series 361: 83-91

Raven, J.A., Cockell, C.S., and De La Rocha, C.L. (2008) The evolution of inorganic carbon concentrating mechanisms in photosynthesis. Philosophical Transactions of the Royal Society of London B 363: 2641-2650.

Titlyanov, E.A., Kiyashko, S.I., Titlyanova, T.V., and Raven, J.A. (2008) δ13C and δ15N values in reef corals Porites lutea and P. cylindrica and in their epilithic and endolithic algae. Marine Biology.

Beardall J, Allen D, Bragg J, Finkel ZV, Flynn KV, Quigg A, Rees TAV, Richardson A, Raven JA (2008?) Allometry and stoichometry of unicellular, colonial and multicellular phytoplankton. New Phytologist in press.

Cockell CS, Lèger A, Fridlund M, Herbst T, Kaltenegger L, Absil O, Beichman C. Benz W, Blanc M, Brack M, Chelli A. Colangeli L, Cottin H, Coudé de Foresto V, Danchi W, Defrère D, den Herder J-W, Eiroa C, Graves J, Henning T, Johnston K, Jones H, Inmadie L, Lammer H, Launhardt R, Lawson P. Lay, OP, Jet Propulsion Laboratory, LeDeigou J-M, Liseai R, Malbet F, Martin SR, Mawet D, Moutou C, Mugnier L, Paresce F, Quirrenbach A, Rabbia Y, Raven JA, Rottgering HJA, Rouan D, Santos N, Selsis E, Serabyn E, Shibai H, Tamura M, Thiébaut F, White G. (2009) Darwin – A mission to detect, and search for life on, extrasolar planets. Astrobiology in press.

Raven, J.A. (2008) Not drowning but photosynthesising: Plant Plastrons Probed. New Phytologist 177: 841-845.

Giornado, M., Norici, A., Ratti, S., and Raven, J.A. (2008) Role for sulphur for algae: acquisition, metabolism, ecology and evolution. In: R Hell et al. (eds) Sulphur Metabolism in Phototrophic Organisms, pp. 405-423. Springer, Dordrecht.

Raven, J.A. (2008) Phosphorus and the future. In: PJ White and JP Hammond (eds) The Ecophysiology of Plant-Phosphorus Interactions, pp. 271-283. Springer, Dordrecht.

Raven, J.A. (2008) Carbon dioxide fixation in Dunaliella spp. and the possible use of this genus in carbon dioxide mitigation and waste reduction. In: A Ben-Amotz, Polle and S Rao (eds) The alga Dunaliella spp. and the possible use of this genus in carbon dioxide mitigation and waste reduction, pp.359-384. Science Publishers, Enfield (NH).

Raven, J.A. (2008) How have genome studies improved our understanding of organelle evolution and metabolism in red algae? In: J Seckbach, D Chapman and A Weber (eds) Red algae in the genomics age. One of a series of books on “Cellular origins, life in extreme environments and astrobiology”. Springer Verlag, Berlin, in press.

Raven, J.A. (2008) Transpiration: how many functions? New Phytologist 179: 905-9078

Raven, J.A. and Maberly, S.C. (2008) Phytoplankton nutrition and related mixotrophy. In: Encyclopedia of Inland Waters (ed. GE Likens), Elsevier, in press.

Grouffaud, S., van West, P., Avrova, A.O., Birch, P.R.J., and Whisson, S.C. (2008) Plasmodium falciparum and Hyaloperonospora parasitica translocation motifs are functional in Phytophthora infestans. Microbiology – In press.

van Poppel, P.M.J.A., Guo, J., van de Vandervoort, P.J.I., Jung, M.W.J., Birch, P.R.J., Whisson, S.C., and Govers, F. (2008) The Phytophthora infestans avirulence gene Avr4 encodes an RxLR-dEER effector. Mol Plant-Microbe Interact – in press (IF: 4.3)

Avrova, A.O., Boevink, P., Young, V., Grenville-Briggs, van West, P., Birch, P.R.J., and Whisson, S.C. (2008). A novel Phytophthora infestans haustorium-specific membrane protein is involved in establishment of a compatible interaction with potato. Cellular Microbiology – in press. (IF: 5.3)

Liu, H., Coulthurst, S., Pritchard, L., Hedley, P., Ravensdale, M., Humphris, S., Burr, T., Takle, G., Brurberg, M.B., Birch, P.R.J., Salmond, G.P.C, and Toth, I.K. (2008) Genome-wide in planta determination of the quorum-sensing regulon in Pectobacterium atrosepticum. PLoS Pathogens

Walker, C.A., Köppe, M., Grenville-Briggs, L.J., Avrova, A.O., Horner, N.R., McKinnon, A.D., Whisson, S.C., Birch, P.R.J, van West, P. (2008) A putative DEAD-box RNA-helicase is required for normal zoospore development in the potato late blight pathogen Phytophthora infestans. Fungal Genetics and Biology. 45: 954-962.

Grenville-Briggs, L.J., Anderson, V.L., Fugelstad, J., Avrova, A.O., Bouzenzana, J., Williams, A., Wawra, S., Whisson, S.C., Birch, P.R.J., Bulone, V., van West, P. (2008) Cellulose synthesis in Phytophthora infestans is required for appressorium formation and successful infection on potato leaves. Plant Cell 20:720-738

Judelson, H.S., Ah-Fong, A.M., Aux, G., Avrova, A.O., Bruce, C., Cakir, C., da Cunha, L., Grenville-Briggs, L., Latijnhouwers, M., Ligterink, W., Meijer, H.J., Roberts, S., Thurber, C.S., Whisson, S.C., Birch, P.R.J., Govers, F., Kamoun, S., van West, P., Windass, J. (2008) Profiling the asexual development and pre-infection transcriptome of the late blight pathogen Phytophthora infestans. Mol. Plant-Microbe Interact. 21:433-447.

Birch, P.R.J., and Avrova, A.O. (2008) Gene expression profiling. In: ‘Oomycete genetics and genomics: diversity, plant and animal interactions, and toolbox’ (Eds Lamour K, Kamoun S) – In press.

Birch, P.R.J., Boevink, P.C., Gilroy, E.M., Hein, I., Pritchard, L., and Whisson, S.C. (2008) RXLR effectors: delivery, functional redundancy and durable disease resistance. Curr Opin Plant Biol 11:373-379.

Preedy, K. Schofield, P.G., Chaplain, M.A.J., and Hubbard, S.F. (2008) Disease induced dynamics in host-parasitoid systems; parasitoid vectored host infection. Ecology Letters (in submission)

Mitchell, C., Johnson, S.N., Gordon, S., Birch, A.N.E., and Hubbard, S.F. (2008) Tri-trophic interaction changes as herbivores start adapting to host plant resistance. Oikos (in submission)

McMenemy, L.S. and Hubbard, S.F. (2008) Mutual interference in the aphidophagous ladybird, Adalia bipunctata (coleoptera: coccinellidae). Bull. Ent. Res. (in submission)