University of Dundee

Computational Biology 2019

Arnaouteli, S, Matoz Fernandez, D, Porter, M, Kalamara, M, Abbott, J, MacPhee, CE, Davidson, F & Stanley-Wall, N 2019, 'Pulcherrimin formation controls growth arrest of the Bacillus subtilis biofilm', Proceedings of the National Academy of Sciences, vol. 116, no. 27, pp. 13553-13562. https://doi.org/10.1073/pnas.1903982116

Bartsch, A, Llabres, S, Pein, F, Kattner, C, Schön, M, Diehn, M, Tanabe, M, Munk, A, Zachariae, U & Steinem, C 2019, 'High-resolution experimental and computational electrophysiology reveals weak β-lactam binding events in the porin PorB', Scientific Reports, vol. 9, 1264, pp. 1-11. https://doi.org/10.1038/s41598-018-37066-9

Batie, M, Frost, J, Frost, M, Wilson, JW, Schofield, P & Rocha, S 2019, 'Hypoxia induces rapid changes to histone methylation and reprograms chromatin', Science, vol. 363, no. 6432, pp. 1222-1226. https://doi.org/10.1126/science.aau5870

Bueren-Calabuig, J, Bage, M, Cowling, V & Pisliakov, A 2019, 'Mechanism of allosteric activation of human mRNA cap methyltransferase (RNMT) by RAM: Insights from accelerated molecular dynamics simulations', Nucleic Acids Research, vol. 47, no. 16, gkz613, pp. 8675-8692. https://doi.org/10.1093/nar/gkz613

Elias, MS, Wright, SC, Remenyi, J, Abbott, JC, Bray, SE, Cole, C, Edwards, S, Gierlinski, M, Glok, M, McGrath, JA, Nicholson, WV, Paternoster, L, Prescott, AR, Have, ST, Whitfield, PD, Lamond, AI & Brown, SJ 2019, 'EMSY expression affects multiple components of the skin barrier with relevance to atopic dermatitis', Journal of Allergy and Clinical Immunology, vol. 144, no. 2, pp. 470-481. https://doi.org/10.1016/j.jaci.2019.05.024

Eykelenboom, J, Gierlinski, M, Yue, Z, Hegarat, N, Pollard, H, Fukagawa, T, Hochegger, H & Tanaka, T 2019, 'Live imaging of marked chromosome regions reveals their dynamic resolution and compaction in mitosis', Journal of Cell Biology, vol. 218, no. 5, pp. 1531-1552. https://doi.org/10.1083/jcb.201807125

Froussios, K, Schurch, N, Mackinnon, K, Gierlinski, M, Duc, C, Simpson, G & Barton, G 2019, 'How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in A. thaliana', Bioinformaticshttps://doi.org/10.1093/bioinformatics/btz089

Froussios, K, Mourao, K, Simpson, G, Barton, G & Schurch, N 2019, 'Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq [version 1; referees: 1 approved, 2 approved with reservations]', F1000 Research, vol. 8, 213, pp. 1-20. https://doi.org/10.12688/f1000research.17916.1

Guo, M, Härtlova, A, Gierlinski, M, Prescott, A, Castellvi, J, Hernandez Losa, J, Petersen, SK, Wenzel, UA, Dill, BD, Emmerich, CH, Ramon Y Cajal, S, Russell, DG & Trost, M 2019, 'Triggering MSR1 promotes JNK-mediated inflammation in IL-4 activated macrophages', EMBO Journal, vol. 38, no. 11, e100299, pp. 1-15. https://doi.org/10.15252/embj.2018100299

MacGowan, S, Madeira, F, Britto-Borges, T, Warowny, M, Drozdetskiy, A, Procter, J & Barton, G 2019, 'The Dundee Resource for Sequence Analysis and Structure Prediction', Protein Sciencehttps://doi.org/10.1002/pro.3783

Mirandela, GD, Tamburrino, G, Hoskisson, PA, Zachariae, U & Javelle, A 2019, 'The lipid environment determines the activity of the Escherichia coli ammonium transporter AmtB', FASEB Journal, vol. 33, no. 2, pp. 1989-1999. https://doi.org/10.1096/fj.201800782R

Mourão, K, Schurch, NJ, Lukoszek, R, Froussios, K, Mackinnon, K, Duc, C, Simpson, G & Barton, G 2019, 'Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA', F1000 Research, vol. 8, 819, pp. 1-7. https://doi.org/10.1101/425900https://doi.org/10.12688/f1000research.18952.1

Nanda, SK, Petrova, T, Marchesi, F, Gierlinski, M, Razsolkov, M, Lee, KL, Wright, SW, Rao, VR, Cohen, P & Arthur, JSC 2019, 'Distinct signals and immune cells drive liver pathology and glomerulonephritis in ABIN1[D485N] mice', Life Science Alliance, vol. 2, no. 6, e201900533, pp. 1-19. https://doi.org/10.26508/lsa.201900533