University of Dundee

Cell and Developmental Biology 2015

Bandarra, D., Biddlestone, J., Mudie, S., Muller, H. A. and Rocha, S. (2015) HIF-1alpha restricts NF-kappaB-dependent gene expression to control innate immunity signals. Disease models & mechanisms. 8, 169-181
d.o.i 10.1242/dmm.017285
Pubmed: 4314782
PMC: 25510503

Du, Q., Kawabe, Y., Schilde, C., Chen, Z. H. and Schaap, P. (2015) The Evolution of Aggregative Multicellularity and Cell-Cell Communication in the Dictyostelia. Journal of molecular biology. 427, 3722-3733
d.o.i 10.1016/j.jmb.2015.08.008
PMC: 26284972

Ellis, P. S., Burbridge, S., Soubes, S., Ohyama, K., Ben-Haim, N., Chen, C., Dale, K., Shen, M. M., Constam, D. and Placzek, M. (2015) ProNodal acts via FGFR3 to govern duration of Shh expression in the prechordal mesoderm. Development. 142, 3821-3832
d.o.i 10.1242/dev.119628
Pubmed: 4712875
PMC: 26417042

Henrique, D., Abranches, E., Verrier, L. and Storey, K. G. (2015) Neuromesodermal progenitors and the making of the spinal cord. Development. 142, 2864-2875
d.o.i 10.1242/dev.119768
PMC: 26329597

Hughes, D. A., Qiu, Y., Demore, C., Weijer, C. J. and Cochran, S. (2015) Alignment of an acoustic manipulation device with cepstral analysis of electronic impedance data. Ultrasonics. 56, 172-177
d.o.i 10.1016/j.ultras.2014.09.017
PMC: 25448425

Kawabe, Y., Schilde, C., Du, Q. and Schaap, P. (2015) A conserved signalling pathway for amoebozoan encystation that was co-opted for multicellular development. Scientific reports. 5, 9644
d.o.i 10.1038/srep09644
Pubmed: 4399386
PMC: 25881075

Li, M., Quan, C., Toth, R., Campbell, D. G., MacKintosh, C., Wang, H. Y. and Chen, S. (2015) Fasting and Systemic Insulin Signaling Regulate Phosphorylation of Brain Proteins That Modulate Cell Morphology and Link to Neurological Disorders. The Journal of biological chemistry. 290, 30030-30041
d.o.i 10.1074/jbc.M115.668103
Pubmed: 4705965
PMC: 26499801

Madeira, F., Tinti, M., Murugesan, G., Berrett, E., Stafford, M., Toth, R., Cole, C., MacKintosh, C. and Barton, G. J. (2015) 14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides. Bioinformatics. 31, 2276-2283
d.o.i 10.1093/bioinformatics/btv133
Pubmed: 4495292
PMC: 25735772

Mariappa, D., Zheng, X., Schimpl, M., Raimi, O., Ferenbach, A. T., Muller, H. A. and van Aalten, D. M. (2015) Dual functionality of O-GlcNAc transferase is required for Drosophila development. Open biology. 5, 150234
d.o.i 10.1098/rsob.150234
Pubmed: 4703063
PMC: 26674417

Miettinen, T. P. and Bjorklund, M. (2015) Mevalonate Pathway Regulates Cell Size Homeostasis and Proteostasis through Autophagy. Cell reports. 13, 2610-2620
d.o.i 10.1016/j.celrep.2015.11.045
Pubmed: 4709259
PMC: 26686643

Miettinen, T. P. and Bjorklund, M. (2015) Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3' untranslated regions. Nucleic acids research. 43, 1019-1034
d.o.i 10.1093/nar/gku1310
Pubmed: 4333376
PMC: 25550424

Newman, T. (2015) Biology is simple. Physical biology. 12, 063002
d.o.i 10.1088/1478-3975/12/6/063002
PMC: 26717100

Pampalona, J., Januschke, J., Sampaio, P. and Gonzalez, C. (2015) Time-lapse recording of centrosomes and other organelles in Drosophila neuroblasts. Methods in cell biology. 129, 301-315
d.o.i 10.1016/bs.mcb.2015.03.003
PMC: 26175445

Pineda, M., Weijer, C. J. and Eftimie, R. (2015) Modelling cell movement, cell differentiation, cell sorting and proportion regulation in Dictyostelium discoideum aggregations. Journal of theoretical biology. 370, 135-150
d.o.i 10.1016/j.jtbi.2015.01.042
PMC: 25665718

Rozbicki, E., Chuai, M., Karjalainen, A. I., Song, F., Sang, H. M., Martin, R., Knolker, H. J., MacDonald, M. P. and Weijer, C. J. (2015) Myosin-II-mediated cell shape changes and cell intercalation contribute to primitive streak formation. Nature cell biology. 17, 397-408
d.o.i 10.1038/ncb3138
Pubmed: 4886837
PMC: 25812521

Schaap, P., I. Barrantes, P. Minx, N. Sasaki, R. W. Anderson, M. Benard, K. K. Biggar, N. E. Buchler, R. Bundschuh, X. Chen, C. Fronick, L. Fulton, G. Golderer, N. Jahn, V. Knoop, L. F. Landweber, C. Maric, D. Miller, A. A. Noegel, R. Peace, G. Pierron, T. Sasaki, M. Schallenberg-Rudinger, M. Schleicher, R. Singh, T. Spaller, K. B. Storey, T. Suzuki, C. Tomlinson, J. J. Tyson, W. C. Warren, E. R. Werner, G. Werner-Felmayer, R. K. Wilson, T. Winckler, J. M. Gott, G. Glockner and W. Marwan (2016). "The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling." Genome Biol Evol 8(1): 109-2.
d.o.i : 10.1093/gbe/evv237
PMC: 26615215

Sheikh, S., Gloeckner, G., Kuwayama, H., Schaap, P., Urushihara, H. and Baldauf, S. L. (2015) Root of Dictyostelia based on 213 universal proteins. Molecular phylogenetics and evolution. 92, 53-62
d.o.i 10.1016/j.ympev.2015.05.017
PMC: 26048704

Stasiulewicz, M., Gray, S. D., Mastromina, I., Silva, J. C., Bjorklund, M., Seymour, P. A., Booth, D., Thompson, C., Green, R. J., Hall, E. A., Serup, P. and Dale, J. K. (2015) A conserved role for Notch signaling in priming the cellular response to Shh through ciliary localisation of the key Shh transducer Smo. Development. 142, 2291-2303
d.o.i 10.1242/dev.125237
Pubmed: 4510595
PMC: 25995356

Sugden, C., Urbaniak, M. D., Araki, T. and Williams, J. G. (2015) The Dictyostelium prestalk inducer differentiation-inducing factor-1 (DIF-1) triggers unexpectedly complex global phosphorylation changes. Molecular biology of the cell. 26, 805-820
d.o.i 10.1091/mbc.E14-08-1319
Pubmed: 4325849
PMC: 25518940

Wiedermann, G., Bone, R. A., Silva, J. C., Bjorklund, M., Murray, P. J. and Dale, J. K. (2015) A balance of positive and negative regulators determines the pace of the segmentation clock. eLife. 4, e05842
d.o.i 10.7554/eLife.05842
Pubmed: 4601006
PMC: 26357015

Wongpaiboonwattana, W. and Stavridis, M. P. (2015) Neural differentiation of mouse embryonic stem cells in serum-free monolayer culture. Journal of visualized experiments : JoVE, e52823
d.o.i 10.3791/52823
PMC: 26066640