University of Dundee

Cell and Developmental Biology 2014

Albergante, L., Blow, J. J. and Newman, T. J. (2014) Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks. eLife. 3, e02863
d.o.i 10.7554/eLife.02863
Pubmed: 4151086
PMC: 25182846

Araki, T., Vu, L. H., Sasaki, N., Kawata, T., Eichinger, L. and Williams, J. G. (2014) Two Dictyostelium tyrosine kinase-like kinases function in parallel, stress-induced STAT activation pathways. Molecular biology of the cell. 25, 3222-3233
d.o.i 10.1091/mbc.E14-07-1182
Pubmed: 4196871
PMC: 25143406

Bandarra, D., Biddlestone, J., Mudie, S., Muller, H. A. and Rocha, S. (2014) Hypoxia activates IKK-NF-kappaB and the immune response in Drosophila melanogaster. Bioscience reports. 34d.o.i 10.1042/BSR20140095
Pubmed: 4114064
PMC: 24993778

Bischof, J., Sheils, E. M., Bjorklund, M. and Basler, K. (2014) Generation of a transgenic ORFeome library in Drosophila. Nature protocols. 9, 1607-1620
d.o.i 10.1038/nprot.2014.105
Pubmed: 4150248
PMC: 24922270

Bone, R. A., Bailey, C. S., Wiedermann, G., Ferjentsik, Z., Appleton, P. L., Murray, P. J., Maroto, M. and Dale, J. K. (2014) Spatiotemporal oscillations of Notch1, Dll1 and NICD are coordinated across the mouse PSM. Development. 141, 4806-4816
d.o.i 10.1242/dev.115535
Pubmed: 4299275
PMC: 25468943

Chen, Q., Quan, C., Xie, B., Chen, L., Zhou, S., Toth, R., Campbell, D. G., Lu, S., Shirakawa, R., Horiuchi, H., Li, C., Yang, Z., MacKintosh, C., Wang, H. Y. and Chen, S. (2014) GARNL1, a major RalGAP alpha subunit in skeletal muscle, regulates insulin-stimulated RalA activation and GLUT4 trafficking via interaction with 14-3-3 proteins. Cellular signalling. 26, 1636-1648
d.o.i 10.1016/j.cellsig.2014.04.012
Pubmed: PMC: 24768767

Chen, Z. H., Raffelberg, S., Losi, A., Schaap, P. and Gartner, W. (2014) A cyanobacterial light activated adenylyl cyclase partially restores development of a Dictyostelium discoideum, adenylyl cyclase a null mutant. Journal of biotechnology. 191, 246-249
d.o.i 10.1016/j.jbiotec.2014.08.008
Pubmed: 4409636
PMC: 25128613

Cisneros, L. H. and Newman, T. J. (2014) Quantifying metastatic inefficiency: rare genotypes versus rare dynamics. Physical biology. 11, 046003
d.o.i 10.1088/1478-3975/11/4/046003
Pubmed: PMC: 25033031

Das, R. M. and Storey, K. G. (2014) Apical abscission alters cell polarity and dismantles the primary cilium during neurogenesis. Science. 343, 200-204
d.o.i 10.1126/science.1247521
Pubmed: 4066580
PMC: 24408437

Dockter, C., Gruszka, D., Braumann, I., Druka, A., Druka, I., Franckowiak, J., Gough, S. P., Janeczko, A., Kurowska, M., Lundqvist, J., Lundqvist, U., Marzec, M., Matyszczak, I., Muller, A. H., Oklestkova, J., Schulz, B., Zakhrabekova, S. and Hansson, M. (2014) Induced variations in brassinosteroid genes define barley height and sturdiness, and expand the green revolution genetic toolkit. Plant physiology. 166, 1912-1927
d.o.i 10.1104/pp.114.250738
Pubmed: 4256852
PMC: 25332507

Du, C. J., Tyson, R., Rozbicki, E., Weijer, C. J. and Bretschneider, T. (2014) Multi-Scale Non-Local Means with Shape Prior for Enhancement of Cell Membrane Images. I S Biomed Imaging, 493-496

Du, Q. and Schaap, P. (2014) The social amoeba Polysphondylium pallidum loses encystation and sporulation, but can still erect fruiting bodies in the absence of cellulose. Protist. 165, 569-579
d.o.i 10.1016/j.protis.2014.07.003
Pubmed: 4210663
PMC: 25113829

Du, Q., Schilde, C., Birgersson, E., Chen, Z. H., McElroy, S. and Schaap, P. (2014) The cyclic AMP phosphodiesterase RegA critically regulates encystation in social and pathogenic amoebas. Cellular signalling. 26, 453-459
d.o.i 10.1016/j.cellsig.2013.10.008
Pubmed: 3906536
PMC: 24184654

Gupta, K. K., Alberico, E. O., Nathke, I. S. and Goodson, H. V. (2014) Promoting microtubule assembly: A hypothesis for the functional significance of the +TIP network. BioEssays : news and reviews in molecular, cellular and developmental biology. 36, 818-826
d.o.i 10.1002/bies.201400029
Pubmed: PMC: 24943963

Hain, D., Langlands, A., Sonnenberg, H. C., Bailey, C., Bullock, S. L. and Muller, H. A. (2014) The Drosophila MAST kinase Drop out is required to initiate membrane compartmentalisation during cellularisation and regulates dynein-based transport. Development. 141, 2119-2130
d.o.i 10.1242/dev.104711
Pubmed: 4011086
PMC: 24803657

Hinck, L. and Nathke, I. (2014) Changes in cell and tissue organization in cancer of the breast and colon. Current opinion in cell biology. 26, 87-95
d.o.i 10.1016/
Pubmed: 3927155
PMC: 24529250

Januschke, J. and Nathke, I. (2014) Stem cell decisions: a twist of fate or a niche market? Seminars in cell & developmental biology. 34, 116-123
d.o.i 10.1016/j.semcdb.2014.02.014
Pubmed: 4169664
PMC: 24613913

Kalcheim, C. and Storey, K. G. (2014) Neural-mesodermal progenitor interactions in pattern formation: an introduction to the collection. F1000Research. 3, 275
d.o.i 10.12688/f1000research.5657.1
Pubmed: 4288398
PMC: 25580236

Marlow, V. L., Cianfanelli, F. R., Porter, M., Cairns, L. S., Dale, J. K. and Stanley-Wall, N. R. (2014) The prevalence and origin of exoprotease-producing cells in the Bacillus subtilis biofilm. Microbiology. 160, 56-66
d.o.i 10.1099/mic.0.072389-0
Pubmed: 3917226
PMC: 24149708

Miettinen, T. P. and Bjorklund, M. (2014) NQO2 is a reactive oxygen species generating off-target for acetaminophen. Molecular pharmaceutics. 11, 4395-4404
d.o.i 10.1021/mp5004866
Pubmed: 4255684
PMC: 25313982

Miettinen, T. P., Pessa, H. K., Caldez, M. J., Fuhrer, T., Diril, M. K., Sauer, U., Kaldis, P. and Bjorklund, M. (2014) Identification of transcriptional and metabolic programs related to mammalian cell size. Current biology : CB. 24, 598-608
d.o.i 10.1016/j.cub.2014.01.071
Pubmed: 3991852
PMC: 24613310

Narita, T. B., Chen, Z. H., Schaap, P. and Saito, T. (2014) The hybrid type polyketide synthase SteelyA is required for cAMP signalling in early Dictyostelium development. PloS one. 9, e106634
d.o.i 10.1371/journal.pone.0106634
Pubmed: 4164351
PMC: 25222736

22 Newman, T. (2014) Water is a molecular liquid. Physical biology. 11, 033001
d.o.i 10.1088/1478-3975/11/3/033001
Pubmed: PMC: 24732704

Ohman, T., Soderholm, S., Hintsanen, P., Valimaki, E., Lietzen, N., MacKintosh, C., Aittokallio, T., Matikainen, S. and Nyman, T. A. (2014) Phosphoproteomics combined with quantitative 14-3-3-affinity capture identifies SIRT1 and RAI as novel regulators of cytosolic double-stranded RNA recognition pathway. Molecular & cellular proteomics : MCP. 13, 2604-2617
d.o.i 10.1074/mcp.M114.038968
Pubmed: 4188990
PMC: 24997996

Olivera-Martinez, I., Schurch, N., Li, R. A., Song, J., Halley, P. A., Das, R. M., Burt, D. W., Barton, G. J. and Storey, K. G. (2014) Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo. Development. 141, 3266-3276
d.o.i 10.1242/dev.112623
Pubmed: 4197544
PMC: 25063452

Qiu, Y., Wang, H., Demore, C. E., Hughes, D. A., Glynne-Jones, P., Gebhardt, S., Bolhovitins, A., Poltarjonoks, R., Weijer, K., Schonecker, A., Hill, M. and Cochran, S. (2014) Acoustic devices for particle and cell manipulation and sensing. Sensors. 14, 14806-14838
d.o.i 10.3390/s140814806
Pubmed: 4179044
PMC: 25123465

Radermacher, P. T., Myachina, F., Bosshardt, F., Pandey, R., Mariappa, D., Muller, H. A. and Lehner, C. F. (2014) O-GlcNAc reports ambient temperature and confers heat resistance on ectotherm development. Proceedings of the National Academy of Sciences of the United States of America. 111, 5592-5597
d.o.i 10.1073/pnas.1322396111
Pubmed: 3992692
PMC: 24706800

Schilde, C., Skiba, A. and Schaap, P. (2014) Evolutionary reconstruction of pattern formation in 98 Dictyostelium species reveals that cell-type specialization by lateral inhibition is a derived trait. EvoDevo. 5, 34
d.o.i 10.1186/2041-9139-5-34
Pubmed: 4406040
PMC: 25904998

Schurch, N. J., Cole, C., Sherstnev, A., Song, J., Duc, C., Storey, K. G., McLean, W. H., Brown, S. J., Simpson, G. G. and Barton, G. J. (2014) Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs. PloS one. 9, e94270
d.o.i 10.1371/journal.pone.0094270
Pubmed: 3983147
PMC: 24722185

Sobczyk, G. J., Wang, J. and Weijer, C. J. (2014) SILAC-based proteomic quantification of chemoattractant-induced cytoskeleton dynamics on a second to minute timescale. Nature communications. 5, 3319
d.o.i 10.1038/ncomms4319
Pubmed: 3971484
PMC: 24569529

Tinti, M., Dissanayake, K., Synowsky, S., Albergante, L. and MacKintosh, C. (2014) Identification of 2R-ohnologue gene families displaying the same mutation-load skew in multiple cancers. Open biology. 4, 140029
d.o.i 10.1098/rsob.140029
Pubmed: 4042849
PMC: 24806839

Tinti, M., Madeira, F., Murugesan, G., Hoxhaj, G., Toth, R. and Mackintosh, C. (2014) ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome. Database : the journal of biological databases and curation. 2014, bat085
d.o.i 10.1093/database/bat085
Pubmed: 3914767
PMC: 24501395

Trani, D., Nelson, S. A., Moon, B. H., Swedlow, J. J., Williams, E. M., Strawn, S. J., Appleton, P. L., Kallakury, B., Nathke, I. and Fornace, A. J., Jr. (2014) High-energy particle-induced tumorigenesis throughout the gastrointestinal tract. Radiation research. 181, 162-171
d.o.i 10.1667/RR13502.1
PMC: 24512616

Vu, L. H., Araki, T., Na, J., Clemen, C. S., Williams, J. G. and Eichinger, L. (2014) Identification of the protein kinases Pyk3 and Phg2 as regulators of the STATc-mediated response to hyperosmolarity. PloS one. 9, e90025
d.o.i 10.1371/journal.pone.0090025
Pubmed: 3934975
PMC: 24587195