University of Dundee

2020

Alegria Terrazas R, Balbirnie-Cumming K, Morris JA, Hedley PE, Russell J, Paterson E, Baggs EM, Fridman E, Bulgarelli D. 2020. A footprint of plant eco-geographic adaptation on the composition of the barley rhizosphere bacterial microbiota. Scientific Reports. 10(1):Article 12916. https://doi.org/10.1038/s41598-020-69672-x

Andrews M, Condron LM, Kemp PD, Topping JF, Lindsey K, Hodge S, Raven JA. 2020. Will rising atmospheric CO2 concentration inhibit nitrate assimilation in shoots but enhance it in roots of C3 plants?. Physiologia Plantarum. 170(1):40-45. https://doi.org/10.1111/ppl.13096

Arrieta M, Colas I, Macaulay M, Waugh R, Ramsay L. 2020. A Modular Tray Growth System for Barley. Pradillo M, Heckmann S, editors. In Plant Meiosis: Methods and Protocols. New York: Humana Press. pp. 367-379. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-4939-9818-0_26

Arrieta M, Willems G, DePessemier J, Colas I, Burkholz A, Darracq A, Vanstraelen S, Pacolet P, Barré C, Kempeneers P, Waugh R, Barnes S, Ramsay L. 2020. The effect of heat stress on sugar beet recombination. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-020-03683-0

Barakate A, Keir E, Oakey H, Halpin C. 2020. Stimulation of homologous recombination in plants expressing heterologous recombinases. BMC Plant Biology. 20(1):1-10. https://doi.org/10.1186/s12870-020-02545-7

Bartlett L, Montague G, McNamara G, Davies B, Fiore A, Sturrock K, Ledbetter M, Hein I, Mantelin S, Harrower B, Higgins S, Stott K. 2020. Operational Considerations FOR HOT-washing in Potato Crisp Manufacture. Food and Bioproducts Processing. 124:387-396. https://doi.org/10.1016/j.fbp.2020.09.014

Barton S, Jenkins J, Buckling A, Schaum C-E, Smirnoff N, Raven JA, Yvon-Durocher G. 2020. Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecology letters. 23(4):722-733. https://doi.org/10.1111/ele.13469

Boevink PC, Birch PRJ, Turnbull D, Whisson SC. 2020. Devastating intimacy: the cell biology of plant-Phytophthora interactions. New Phytologist. https://doi.org/10.1111/nph.16650

Bretani G, Rossini L, Ferrandi C, Russell J, Waugh R, Kilian B, Bagnaresi P, Cattivelli L, Fricano A. 2020. Segmental duplications are hot spots of copy number variants affecting barley gene content. Plant Journal. 103(3):1073-1088. https://doi.org/10.1111/tpj.14784

Darrier B, Arrieta M, Mittmann SU, Sourdille P, Ramsay L, Waugh R, Colas I. 2020. Following the Formation of Synaptonemal Complex Formation in Wheat and Barley by High-Resolution Microscopy. Pradillo M, Heckmann S, editors. In Plant Meiosis: Methods and Protocols. New York: Humana Press. pp. 207-215. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-4939-9818-0_15

Del Cortona A, Jackson CJ, Bucchini F, Van Bel M, D'hondt S, Škaloud P, Delwiche CF, Knoll AH, Raven JA, Verbruggen H, Vandepoele K, De Clerck O, Leliaert F. 2020. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences of the United States of America. 117(5):2551-2559. https://doi.org/10.1073/pnas.1910060117

Escudero-Martinez C, Leybourne DJ, Bos JIB. 2020. Plant resistance in different cell layers affects aphid probing and feeding behaviour during non-host and poor-host interactions. Bulletin of Entomological Research. https://doi.org/10.1017/S0007485320000231

Escudero-Martinez C, Rodriguez PA, Liu S, Santos PA, Stephens J, Bos J. 2020. An aphid effector promotes barley susceptibility through suppression of defence gene expression. Journal of Experimental Biology. 71(9):2796-2807. https://doi.org/10.1093/jxb/eraa043

Garcia-Gimenez G, Barakate A, Smith P, Stephens J, Khor SF, Doblin MS, Hao P, Bacic A, Fincher GB, Burton RA, Waugh R, Tucker MR, Houston K. 2020. Targeted mutation of barley (1,3;1,4)-β-glucan synthases reveals complex relationships between the storage and cell wall polysaccharide content. Plant Journal. https://doi.org/10.1111/tpj.14977

He Q, McLellan H, Boevink PC, Birch PRJ. 2020. All roads lead to susceptibility: the many modes-of-action of fungal and oomycete intracellular effectors. Plant Communications. Article 100050. https://doi.org/10.1016/j.xplc.2020.100050

Hemsley PA. 2020. S-acylation in plants: an expanding field. Biochemical Society Transactions. 48(2):529-536. https://doi.org/10.1042/BST20190703

Houston K, Qiu J, Wege S, Hrmova M, Oakey H, Qu Y, Smith P, Situmorang A, Macaulay M, Flis P, Bayer M, Roy S, Halpin C, Russell J, Schreiber M, Byrt C, Gilliham M, Salt DE, Waugh R. 2020. Barley sodium content is regulated by natural variants of the Na+ transporter HvHKT1;5. Communications Biology. 3(1):1-9. https://doi.org/10.1038/s42003-020-0990-5

Hurd, C.L., Beardall, J., Comeau, S., Cornwall, C.E., Havenhand, J.N., Munday, P.L., Parker, L., Raven, J.A., McGraw, C.M. (2020) Ocean acidification as a multiple driver: how interactions between changing seawater carbonate parameters affect marine life. Marine and Freshwater Biology 71: 263-274. https://doi.org/10.1071/MF19267

Jones H. 2020. Artificial Intelligence for plant identification on smartphones and tablets. BSBI News. 144:34-40.

Jones HG. 2020. What plant is that? Tests of automated image recognition apps for plant identification on plants from the British flora. AoB PLANTS. 12(6): Article plaa052. https://doi.org/10.1093/aobpla/plaa052

Kuo RI, Cheng Y, Zhang R, Brown JWS, Smith J, Archibald AL, Burt DW. 2020. Illuminating the dark side of the human transcriptome with long read transcript sequencing. BMC Genomics. 21: Article 751. https://doi.org/10.1186/s12864-020-07123-7

Lavoie M, Raven JA. 2020. How can large celled diatoms rapidly modulate sinking rates episodically?. Journal of Experimental Botany. 71(12):3386-3389. https://doi.org/10.1093/jxb/eraa129

Leybourne D, Bos J, Valentine TA, Karley A. 2020. The price of protection: a defensive endosymbiont impairs nymph growth in the bird cherry‐oat aphid, Rhopalosiphum padi. Insect Science. 27(1):69-85. https://doi.org/10.1111/1744-7917.12606

Leybourne DJ, Valentine TA, Bos JIB, Karley AJ. 2020. A fitness cost resulting from Hamiltonella defensa infection is associated with altered probing and feeding behaviour in Rhopalosiphum padi. Journal of Experimental Biology. 223(1):Article jeb207936. https://doi.org/10.1242/jeb.207936

Lin X, Armstrong M, Baker K, Wouters D, Visser RGF, Wolters PJ, Hein I, Vleeshouwers VGAA. 2020. RLP/K enrichment sequencing; a novel method to identify receptor-like protein (RLP) and receptor-like kinase (RLK) genes. New Phytologist. 227(4):1264-1276. https://doi.org/10.1111/nph.16608

Lin X, Song T, Fairhead S, Witek K, Jouet A, Jupe F, Witek AI, Karki HS, Vleeshouwers VGAA, Hein I, Jones JDG. 2020. Identification of Avramr1 from Phytophthora infestans using long read and cDNA pathogen-enrichment sequencing (PenSeq). Molecular Plant Pathology. https://doi.org/10.1111/mpp.12987

Lin X, Wang S, de Rond L, Bertolin N, Wouters RHM, Wouters D, Domazakis E, Bitew MK, Win J, Dong S, Visser RGF, Birch P, Kamoun S, Vleeshouwers VGAA. 2020. Divergent Evolution of PcF/SCR74 Effectors in Oomycetes Is Associated with Distinct Recognition Patterns in Solanaceous Plants. MBio. 11(3):Article e00947-20. https://doi.org/10.1128/mBio.00947-20

Looseley ME, Ramsay L, Bull H, Swanston JS, Shaw PD, Macaulay M, Booth A, Russell JR, Waugh R, the IMPROMALT Consortium, Thomas WTB. 2020. Association mapping of malting quality traits in UK spring and winter barley cultivar collections. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-020-03618-9

Lovelock CE, Reef R, Raven JA, Pandolfi JM. 2020. Regional variation in δ13C of coral reef macroalgae. Limnology and Oceanography. https://doi.org/10.1002/lno.11453

Malerba ME, Marshall DJ, Palacios MM, Raven JA, Beardall J. 2020. Cell size influences inorganic carbon acquisition in artificially selected phytoplankton. New Phytologist. https://doi.org/10.1111/nph.17068

McCouch S, Navabi K, Abberton M, Anglin NL, Barbieri RL, Baum M, Bett K, Booker H, Brown GL, Bryan GJ, Cattivelli L, Charest D, Eversole K, Freitas M, Ghamkhar K, Grattapaglia D, Henry R, Valadares Inglis MC, Islam T, Kehel Z, Kersey PJ, Kresovich S, Marden E, Mayes S, Ndjiondjop MN, Nguyen HT, Paiva S, Papa R, Phillips PWB, Rasheed A, Richards C, Rouard M, Amstalden Sampaio MJ, Scholz U, Shaw PD, Sherman B, Staton SE, Stein N, Svensson J, Tester M, Montenegro Valls JF, Varshney R, Visscher S, von Wettberg E, Waugh R, Wenzl PWB, Rieseberg LH. 2020. Mobilizing Crop Biodiversity. Molecular Plant. https://doi.org/10.1016/j.molp.2020.08.011

McKim SM. 2020. Moving on up - controlling internode growth. New Phytologist. 226(3):672-678. https://doi.org/10.1111/nph.16439

McLellan H, Chen K, He Q, Wu X, Boevink PC, Tian Z, Birch P. 2020. The ubiquitin E3 ligase PUB17 positively regulates immunity by targeting a negative regulator, KH17, for degradation. Plant Communications. 1(4): Article 100020. https://doi.org/10.1016/j.xplc.2020.100020

Melandri G, Prashar A, Mccouch SR, Van Der Linden G, Jones HG, Kadam N, Jagadish K, Bouwmeester H, Ruyter-Spira C. 2020. Association mapping and genetic dissection of drought-induced canopy temperature differences in rice. Journal of Experimental Botany. 71(4):1614-1627. https://doi.org/10.1093/jxb/erz527

Nguyen DT, Gomez LD, Harper A, Halpin C, Waugh R, Simister R, Whitehead C, Oakey H, Nguyen HT, Nguyen TV, Duong TX, McQueen-Mason SJ. 2020. Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw. Biotechnology for Biofuels. 13:Article 165. https://doi.org/10.1186/s13068-020-01807-8

Parker MT, Knop K, Sherwood AV, Schurch NJ, Mackinnon K, Gould PD, Hall AJW, Barton GJ, Simpson GG. 2020. Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification. eLife. 9:1-35. https://doi.org/10.7554/eLife.49658

Parker MT, Knop K, Simpson GG. 2020. Making a mark: The role of RNA modifications in plant biology. Biochemist. 42(4):26-30. https://doi.org/10.1042/BIO20200046

Parry G, Benitez-Alfonso Y, Gibbs DJ, Grant M, Harper A, Harrison CJ, Kaiserli E, Leonelli S, May S, McKim S, Spoel S, Turnbull C, van der Hoorn RAL, Murray J. 2020. How to build an effective research network: lessons from two decades of the GARNet plant science community. Journal of Experimental Botany. https://doi.org/10.1093/jxb/eraa397

Preedy K, Brennan R, Jones H, Gordon S. 2020. Improved models of the effects of winter chilling on blackcurrant (Ribes nigrum L.) show cultivar specific sensitivity to warm winters. Agricultural and Forest Meteorology. 280:1-30. https://doi.org/10.1016/j.agrformet.2019.107777

Raven JA, Beardall J. 2020. Energizing the plasmalemma of marine photosynthetic organisms: The role of primary active transport. Journal of the Marine Biological Association of the United Kingdom. 100(3):333-346. https://doi.org/10.1017/S0025315420000211

Raven JA, Beilby MJ. 2020. Protein assemblages and tight curves in the plasma membrane of photosynthetic organisms. Journal of Plant Physiology. https://doi.ors/10.1016/j.jplph.2020.153330

Raven JA, Gobler CS, Hansen PJ. 2020. Dynamic CO2 and pH levels in coastal, estuarine, and inland waters: Theoretical and observed effects on harmful algal blooms. Harmful Algae. 91:Article 101594. https://doi.org/10.1016/j.hal.2019.03.012

Raven JA, Suggett DJ, Giordano M. 2020. Inorganic carbon concentrating mechanisms in free-living and symbiotic dinoflagellates and chromerids. Journal of Phycology. https://doi.org/10.1111/jpy.13050

Raven JA. 2020. Chloride involvement in the synthesis, functioning and repair of the photosynthetic apparatus in vivo. New Phytologist. 227(2):334-342. https://doi.org/10.1111/nph.16541

Raxwal VK, Simpson CG, Gloggnitzer J, Entinze JC, Guo W, Zhang R, Brown JWS, Riha K. 2020. Nonsense-Mediated RNA Decay Factor UPF1 Is Critical for Posttranscriptional and Translational Gene Regulation in Arabidopsis. Plant Cell. 32(9):2725-2741. https://doi.org/10.1105/tpc.20.00244

Saade S, Brien C, Pailles Y, Berger B, Shahid M, Russell J, Waugh R, Negrão S, Tester M. 2020. Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages. PLoS ONE. 15(7): Article e0236037. https://doi.org/10.1371/journal.pone.0236037

Schreiber M, Mascher M, Wright J, Padmarasu S, Himmelbach A, Heavens D, Milne L, Clavijo BJ, Stein N, Waugh R. 2020. A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise. G3 : Genes, Genomes, Genetics. 10(6):1823-1827. https://doi.org/10.1534/g3.119.401010

Thorpe P, Escudero‐Martinez CM, Eves-van den Akker S, Bos JIB. 2020. Transcriptional changes in the aphid species Myzus cerasi under different host and environmental conditions. Insect Molecular Biology. 29(3):271-282. https://doi.org/10.1111/imb.12631

Torrance L, Cowan GH, McLean K, MacFarlane SA, Al-Abedy AN, Armstrong M, Lim T-Y, Hein I, Bryan GJ. 2020. Natural resistance to Potato virus Y in Solanum tuberosum Group Phureja. Theoretical and Applied Genetics. 133(3):967-980. https://doi.org/10.1007/s00122-019-03521-y

Zheng J, Duan S, Armstrong M, Duan Y, Xu J, Chen X, Hein I, Jin L, Li G. 2020. New Findings on the Resistance Mechanism of an Elite Diploid Wild Potato Species JAM1-4 in Response to a Super Race Strain of Phytophthora infestans. Phytopathology. 110(8):1375-1387. https://doi.org/10.1094/PHYTO-09-19-0331-R