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Motif Criteria Details: |
1.RING-H2: C-X(2)-C-X(9,39)-C-X(1,3)-H-X(2,3)-H-X(2)-C-X(4,48)-C-X(2)-C |
2.RING-HC: C-X(2)-C-X(9,39)-C-X(1,3)-H-X(2,3)-C-X(2)-C-X(4,48)C-X(2)-C |
3.RING-HCa:C-X-[I/V]-C-X(10,28)-C-X(1,2)-G-H-X(1,2)-F-C-X(2)-C-X(3)-W-X(6,30)-C-P-X-C |
4.RING-HCb:C-X-[I/V]-C-X(13,24)-C-X(1,2)-G-H-X(1,2)-F-C-X(2)-C-X(7,22)-C-P-X(2,8)-C |
5.RING-C2: C-X(2)-C-X(13)-C-X-C-X(4)-C-X(2)-C-X(11,16)-C-X(2)-C |
6.RING-v: C-X(2)-C-X(10,45)-C-X-C-X(7)-H-X(2)-C-X(11,24)-C-X(2)-C |
7.RING-D: C-X-[I/V]-C-[L/E/E/F]-X(2)-G-X(5)-[L/P]-C-G-H-X-F-D-X(2)-C-X(3)-[W/F]-X(4)-H-X-C-[P/L]-C |
8.RING-S/T:C-X-V-[C/S]-X(14,15)-C-G-H-X-F-[H/C]-X(2,3)-[S/T]-X(2,3)-W-X(7,11)-C-X(2)-C |
9.RING-G: C-X(2)-C-X(1,88)-C-X-H-X(2)-G-X(2)-C-X(13)-C-X(2)-C |
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These motifs are published by Sophia L. Stone These motifs are adjusted to include all the known proteins against that motif. Also the script only searches for non overlapping patterns due to inbuilt functional constraint.
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