University of Dundee

Plant Sciences 2012

Birch, P. R. J., Bryan, G., Fenton, B., Gilroy, E. M., Hein, I., Jones, J., Taylor, M., Torrance, L. and Toth, I. K. (2012) Re-localisation of late blight resistance protein R3a to endosomal compartments is associated with effector recognition and required for the immune response. Food Security. 4, 477-508

Comadran, J., Kilian, B., Russell, J., Ramsay, L., Stein, N., Ganal, M., Shaw, P., Bayer, M., Thomas, W., Marshall, D., Hedley, P., Tondelli, A., Pecchioni, N., Francia, E., Korzun, V., Walther, A. and Waugh, R. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nat Genet. 44, 1388-1392
doi. 10.1038/ng.2447
Pubmed. 23160098

Cooke, D. E., Cano, L. M., Raffaele, S., Bain, R. A., Cooke, L. R., Etherington, G. J., Deahl, K. L., Farrer, R. A., Gilroy, E. M., Goss, E. M., Grunwald, N. J., Hein, I., MacLean, D., McNicol, J. W., Randall, E., Oliva, R. F., Pel, M. A., Shaw, D. S., Squires, J. N., Taylor, M. C., Vleeshouwers, V. G., Birch, P. R., Lees, A. K. and Kamoun, S. (2012) Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog. 8, e1002940
doi. 10.1371/journal.ppat.1002940
Pubmed. 23055926

Dietrich, R. C., Bengough, A. G., Jones, H. G. and White, P. J. (2012) A new physical interpretation of plant root capacitance. J Exp Bot. 63, 6149-6159
doi. 10.1093/jxb/ers264
Pubmed. 23028023

Engelhardt, S., Boevink, P. C., Armstrong, M. R., Ramos, M. B., Hein, I. and Birch, P. R. (2012) Relocalization of Late Blight Resistance Protein R3a to Endosomal Compartments Is Associated with Effector Recognition and Required for the Immune Response. Plant Cell
doi. 10.1105/tpc.112.104992
Pubmed. 23243124

Higgins, J. D., Perry, R. M., Barakate, A., Ramsay, L., Waugh, R., Halpin, C., Armstrong, S. J. and Franklin, F. C. (2012) Spatiotemporal asymmetry of the meiotic program underlies the predominantly distal distribution of meiotic crossovers in barley. Plant Cell. 24, 4096-4109
doi. 10.1105/tpc.112.102483
Pubmed. 23104831

Houston, K., Druka, A., Bonar, N., Macaulay, M., Lundqvist, U., Franckowiak, J., Morgante, M., Stein, N. and Waugh, R. (2012) Analysis of the barley bract suppression gene Trd1. Theor Appl Genet. 125, 33-45
doi. 10.1007/s00122-012-1814-x
Pubmed. 22395962

Howden, A. J. and Huitema, E. (2012) Effector-triggered post-translational modifications and their role in suppression of plant immunity. Front Plant Sci. 3, 160
doi. 10.3389/fpls.2012.00160
Pubmed. 22811685

Hubner, S., Gunther, T., Flavell, A., Fridman, E., Graner, A., Korol, A. and Schmid, K. J. (2012) Islands and streams: clusters and gene flow in wild barley populations from the Levant. Mol Ecol. 21, 1115-1129
doi. 10.1111/j.1365-294X.2011.05434.x
Pubmed. 22256891

James, A. B., Syed, N. H., Bordage, S., Marshall, J., Nimmo, G. A., Jenkins, G. I., Herzyk, P., Brown, J. W. and Nimmo, H. G. (2012) Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell. 24, 961-981
doi. 10.1105/tpc.111.093948
Pubmed. 22408072

Jing, R., Ambrose, M. A., Knox, M. R., Smykal, P., Hybl, M., Ramos, A., Caminero, C., Burstin, J., Duc, G., van Soest, L. J., Swiecicki, W. K., Pereira, M. G., Vishnyakova, M., Davenport, G. F., Flavell, A. J. and Ellis, T. H. (2012) Genetic diversity in European Pisum germplasm collections. Theor Appl Genet. 125, 367-380
doi. 10.1007/s00122-012-1839-1
Pubmed. 22466957

Jones, H. G. (2012) How do rootstocks control shoot water relations? New Phytol. 194, 301-303
doi. 10.1111/j.1469-8137.2012.04110.x
Pubmed. 22428698

Jones, H. G., Hillis, R. M., Gordon, S. L. and Brennan, R. M. (2012) An approach to the determination of winter chill requirements for different Ribes cultivars. Plant Biol (Stuttg)
doi. 10.1111/j.1438-8677.2012.00590.x
Pubmed. 22512943

Jones, M. A., Williams, B. A., McNicol, J., Simpson, C. G., Brown, J. W. and Harmer, S. L. (2012) Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 Causes Circadian Clock Defects. Plant Cell. 24, 4066-4082
doi. 10.1105/tpc.112.104828
Pubmed. 23110899

Kalyna, M., Simpson, C. G., Syed, N. H., Lewandowska, D., Marquez, Y., Kusenda, B., Marshall, J., Fuller, J., Cardle, L., McNicol, J., Dinh, H. Q., Barta, A. and Brown, J. W. (2012) Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res. 40, 2454-2469
doi. 10.1093/nar/gkr932
Pubmed. 22127866

Lamour, K., Mudge, J., Gobena, D., Hurtado-Gonzales, O. P., Schmutz, J., Kuo, A., Miller, N. A., Rice, B. J., Raffaele, S., Cano, L., Bharti, A. K., Donahoo, R. S., Finley, S. L., Huitema, E., Hulvey, J., Platt, D., Salamov, A., Savidor, A., Sharma, R., Stam, R., Storey, D., Thines, M., Win, J., Haas, B., Dinwiddie, D., Jenkins, J., Knight, J., Affourtit, J., Han, C. S., Chertkov, O., Lindquist, E. A., Detter, C., Grigoriev, I. V., Kamoun, S. and Kingsmore, S. F. (2012) Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Mol Plant Microbe Interact
doi. 10.1094/MPMI-02-12-0028-R
Pubmed. 22712506

Marquez, Y., Brown, J. W., Simpson, C., Barta, A. and Kalyna, M. (2012) Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res. 22, 1184-1195
doi. 10.1101/gr.134106.111
Pubmed. 22391557

Mayer, K. F., Waugh, R., Brown, J. W., Schulman, A., Langridge, P., Platzer, M., Fincher, G. B., Muehlbauer, G. J., Sato, K., Close, T. J., Wise, R. P. and Stein, N. (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature. 491, 711-716
doi. 10.1038/nature11543
Pubmed. 23075845

P, S., Aubert, G., Burstin, J., Coyne, C. J., Ellis, T. H. N., Flavell, A. J., Ford, R., Hybl, M., Macas, J., Neumann, P., McPhee, K. E., Redden, R. J., Rubiales, D., Weller, J. L. and Warkentin, T. D. (2012) Pea (Pisum sativum L.) in the Genomic Era. Agronomy. 2, 74-115

Raven, J. A. (2012) Algal biogeography: metagenomics shows distribution of a picoplanktonic pelagophyte. Curr Biol. 22, R682-683
doi. 10.1016/j.cub.2012.07.030
Pubmed. 22974994

Raven, J. A., Giordano, M., Beardall, J. and Maberly, S. C. (2012) Algal evolution in relation to atmospheric CO2: carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles. Philos Trans R Soc Lond B Biol Sci. 367, 493-507
doi. 10.1098/rstb.2011.0212
Pubmed. 22232762

Raven, J. A. and Hurd, C. L. (2012) Ecophysiology of photosynthesis in macroalgae. Photosynth Res. 113, 105-125
doi. 10.1007/s11120-012-9768-z
Pubmed. 22843100

Sherstnev, A., Duc, C., Cole, C., Zacharaki, V., Hornyik, C., Ozsolak, F., Milos, P. M., Barton, G. J. and Simpson, G. G. (2012) Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nat Struct Mol Biol. 19, 845-852
doi. 10.1038/nsmb.2345
Pubmed. 22820990

Streitner, C., Koster, T., Simpson, C. G., Shaw, P., Danisman, S., Brown, J. W. and Staiger, D. (2012) An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Res
doi. 10.1093/nar/gks873
Pubmed. 23042250

Syed, N. H., Kalyna, M., Marquez, Y., Barta, A. and Brown, J. W. (2012) Alternative splicing in plants--coming of age. Trends Plant Sci. 17, 616-623
doi. 10.1016/j.tplants.2012.06.001
Pubmed. 22743067

Vanholme, R., Storme, V., Vanholme, B., Sundin, L., Christensen, J. H., Goeminne, G., Halpin, C., Rohde, A., Morreel, K. and Boerjan, W. (2012) A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. Plant Cell. 24, 3506-3529
doi. 10.1105/tpc.112.102574
Pubmed. 23012438

Wawra, S., Bain, J., Durward, E., de Bruijn, I., Minor, K. L., Matena, A., Lobach, L., Whisson, S. C., Bayer, P., Porter, A. J., Birch, P. R., Secombes, C. J. and van West, P. (2012) Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner. Proc Natl Acad Sci U S A. 109, 2096-2101
doi. 10.1073/pnas.1113775109
Pubmed. 22308362

Weber, N., Halpin, C., Hannah, L. C., Jez, J. M., Kough, J. and Parrott, W. (2012) Editor's Choice: Crop Genome Plasticity and Its Relevance to Food and Feed Safety of Genetically Engineered Breeding Stacks. Plant Physiol. 160, 1842-1853
doi. 10.1104/pp.112.204271
Pubmed. 23060369

Whisson, S. C., Avrova, A. O., Boevink, P. C., Armstrong, M. R., Ahmad-Seman, Z., Hein, I. and Birch, P. R. J. (2012) Exploiting knowledge of pathogen effectors to enhance late blight resistance in potato. Potato Research. 54, 325-340