University of Dundee

Computational Biology 2019

Arnaouteli, S, Matoz Fernandez, D, Porter, M, Kalamara, M, Abbott, J, MacPhee, CE, Davidson, F & Stanley-Wall, N 2019, 'Pulcherrimin formation controls growth arrest of the Bacillus subtilis biofilm', Proceedings of the National Academy of Sciences, vol. 116, no. 27, pp. 13553-13562.

Bartsch, A, Llabres, S, Pein, F, Kattner, C, Schön, M, Diehn, M, Tanabe, M, Munk, A, Zachariae, U & Steinem, C 2019, 'High-resolution experimental and computational electrophysiology reveals weak β-lactam binding events in the porin PorB', Scientific Reports, vol. 9, 1264, pp. 1-11.

Batie, M, Frost, J, Frost, M, Wilson, JW, Schofield, P & Rocha, S 2019, 'Hypoxia induces rapid changes to histone methylation and reprograms chromatin', Science, vol. 363, no. 6432, pp. 1222-1226.

Bueren-Calabuig, J, Bage, M, Cowling, V & Pisliakov, A 2019, 'Mechanism of allosteric activation of human mRNA cap methyltransferase (RNMT) by RAM: Insights from accelerated molecular dynamics simulations', Nucleic Acids Research, vol. 47, no. 16, gkz613, pp. 8675-8692.

Elias, MS, Wright, SC, Remenyi, J, Abbott, JC, Bray, SE, Cole, C, Edwards, S, Gierlinski, M, Glok, M, McGrath, JA, Nicholson, WV, Paternoster, L, Prescott, AR, Have, ST, Whitfield, PD, Lamond, AI & Brown, SJ 2019, 'EMSY expression affects multiple components of the skin barrier with relevance to atopic dermatitis', Journal of Allergy and Clinical Immunology, vol. 144, no. 2, pp. 470-481.

Eykelenboom, J, Gierlinski, M, Yue, Z, Hegarat, N, Pollard, H, Fukagawa, T, Hochegger, H & Tanaka, T 2019, 'Live imaging of marked chromosome regions reveals their dynamic resolution and compaction in mitosis', Journal of Cell Biology, vol. 218, no. 5, pp. 1531-1552.

Froussios, K, Schurch, N, Mackinnon, K, Gierlinski, M, Duc, C, Simpson, G & Barton, G 2019, 'How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in A. thaliana', Bioinformatics

Froussios, K, Mourao, K, Simpson, G, Barton, G & Schurch, N 2019, 'Relative Abundance of Transcripts (RATs): Identifying differential isoform abundance from RNA-seq [version 1; referees: 1 approved, 2 approved with reservations]', F1000 Research, vol. 8, 213, pp. 1-20.

Guo, M, Härtlova, A, Gierlinski, M, Prescott, A, Castellvi, J, Hernandez Losa, J, Petersen, SK, Wenzel, UA, Dill, BD, Emmerich, CH, Ramon Y Cajal, S, Russell, DG & Trost, M 2019, 'Triggering MSR1 promotes JNK-mediated inflammation in IL-4 activated macrophages', EMBO Journal, vol. 38, no. 11, e100299, pp. 1-15.

MacGowan, S, Madeira, F, Britto-Borges, T, Warowny, M, Drozdetskiy, A, Procter, J & Barton, G 2019, 'The Dundee Resource for Sequence Analysis and Structure Prediction', Protein Science

Mirandela, GD, Tamburrino, G, Hoskisson, PA, Zachariae, U & Javelle, A 2019, 'The lipid environment determines the activity of the Escherichia coli ammonium transporter AmtB', FASEB Journal, vol. 33, no. 2, pp. 1989-1999.

Mourão, K, Schurch, NJ, Lukoszek, R, Froussios, K, Mackinnon, K, Duc, C, Simpson, G & Barton, G 2019, 'Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA', F1000 Research, vol. 8, 819, pp. 1-7.

Nanda, SK, Petrova, T, Marchesi, F, Gierlinski, M, Razsolkov, M, Lee, KL, Wright, SW, Rao, VR, Cohen, P & Arthur, JSC 2019, 'Distinct signals and immune cells drive liver pathology and glomerulonephritis in ABIN1[D485N] mice', Life Science Alliance, vol. 2, no. 6, e201900533, pp. 1-19.