University of Dundee

Computational Biology 2018

Bartsch A, Llabres S, Pein F, Kattner C, Schön M, Diehn M, Tanabe M, Munk A, Zachariae U, Steinem C. 2018. High-resolution experimental and computational electrophysiology reveals weak β-lactam binding events in the porin PorB. Scientific Reports

Gierlinski M, Gastaldello F, Cole C, Barton G. 2018. Proteus: an R package for downstream analysis of MaxQuant output . BioRxiv.

Gundogdu M, Llabres S, Gorelik A, Ferenbach A, Zachariae U, Van Aalten D. 2018. The O-GlcNAc Transferase Intellectual Disability Mutation L254F Distorts the TPR Helix. Cell Chemical Biology. 25:1-6. Available from: 10.1016/j.chembiol.2018.03.004

Henkes S, Marchetti MC, Sknepnek R. 2018. Dynamical patterns in nematic active matter on a sphere. Physical Review A. 97(4). Available from: 10.1103/PhysRevE.97.042605

Kokkoorakunnel Ramankutty P, Henkes S, Sknepnek R. 2018. Dynamically generated patterns in dense suspensions of active filaments. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics. 97(2). Available from: 10.1103/PhysRevE.97.022606

Kopec W, Köpfer DA, Vickery ON, Bondarenko AS, Jansen TLC, De Groot BL, Zachariae U. 2018. Direct knock-on of desolvated ions governs strict ion selectivity in K+ channels. Nature Chemistry. 10(8):813-820.

Mirandela GD, Tamburrino G, Ivanovic MT, Strnad FM, Byron O, Rasmussen T, Hoskisson PA, Hub JS, Zachariae U, Gabel F, Javelle A. 2018. Merging In-Solution X‑ray and Neutron Scattering Data Allows Fine Structural Analysis of Membrane−Protein Detergent Complexes. Journal of Physical Chemistry Letters. 9:3910-3914. Available from: 10.1021/acs.jpclett.8b01598

Mirandela GD, Tamburrino G, Hoskisson PA, Zachariae U, Javelle A. 2018. The lipid environment determines the activity of the Escherichia coli ammonium transporter AmtB. FASEB Journal. 33.

Troshin PV, Procter JB, Sherstnev A, Barton DL, Madeira F, Barton GJ. 2018. JABAWS 2.2 Distributed Web Services for Bioinformatics: Protein Disorder, Conservation and RNA Secondary Structure. Bioinformatics. 34(11):1939-1940. Available from: 10.1093/bioinformatics/bty045

Vickery O, Carvalheda Dos Santos C, Zaidi SA, Pisliakov A, Katritch V, Zachariae U. 2018. Intracellular Transfer of Na+ in an Active State G Protein Coupled Receptor. Structure. 26(1):171-180.e2. Available from: 10.1016/j.str.2017.11.013

Zeth K, Zachariae U. 2018. Ten Years of High Resolution Structural Research on the Voltage Dependent Anion Channel (VDAC)—Recent Developments and Future Directions. Frontiers in Physiology. 9:1-6. Available from: 10.3389/fphys.2018.00108