University of Dundee

Molecular Microbiology 2013

Alcock, F., Baker, M. A., Greene, N. P., Palmer, T., Wallace, M. I. and Berks, B. C. (2013) Live cell imaging shows reversible assembly of the TatA component of the twin-arginine protein transport system. Proc Natl Acad Sci U S A. 110, E3650-3659
d.o.i: 10.1073/pnas.1306738110
PubMed: 3780885
PMC: 24003141

An, S. Q., Chin, K. H., Febrer, M., McCarthy, Y., Yang, J. G., Liu, C. L., Swarbreck, D., Rogers, J., Maxwell Dow, J., Chou, S. H. and Ryan, R. P. (2013) A cyclic GMP-dependent signalling pathway regulates bacterial phytopathogenesis. The EMBO journal. 32, 2430-2438
d.o.i: 10.1038/emboj.2013.165
PubMed: 3770947
PMC: 23881098

An, S. Q., Febrer, M., McCarthy, Y., Tang, D. J., Clissold, L., Kaithakottil, G., Swarbreck, D., Tang, J. L., Rogers, J., Dow, J. M. and Ryan, R. P. (2013) High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesis. Mol Microbiol. 88, 1058-1069
d.o.i: 10.1111/mmi.12229
PubMed: 3744752
PMC: 23617851

Arrieta-Ortiz, M. L., Rodriguez, R. L., Perez-Quintero, A., Poulin, L., Diaz, A. C., Arias Rojas, N., Trujillo, C., Restrepo Benavides, M., Bart, R., Boch, J., Boureau, T., Darrasse, A., David, P., Duge de Bernonville, T., Fontanilla, P., Gagnevin, L., Guerin, F., Jacques, M. A., Lauber, E., Lefeuvre, P., Medina, C., Medina, E., Montenegro, N., Munoz Bodnar, A., Noel, L. D., Ortiz Quinones, J. F., Osorio, D., Pardo, C., Patil, P. B., Poussier, S., Pruvost, O., Robene-Soustrade, I., Ryan, R. P., Tabima, J., Urrego Morales, O. G., Verniere, C., Carrere, S., Verdier, V., Szurek, B., Restrepo, S., Lopez, C., Koebnik, R. and Bernal, A. (2013) Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151. Plos One. 8, e79704
d.o.i: 10.1371/journal.pone.0079704
PubMed: 3838355
PMC: 24278159

Bowman, L., Palmer, T. and Sargent, F. (2013) A regulatory domain controls the transport activity of a twin-arginine signal peptide. FEBS Lett. 587, 3365-3370
d.o.i: 10.1016/j.febslet.2013.09.005
PMC: 24036452

Cairns, L. S., Marlow, V. L., Bissett, E., Ostrowski, A. and Stanley-Wall, N. R. (2013) A mechanical signal transmitted by the flagellum controls signalling in Bacillus subtilis. Mol Microbiol. 90, 6-21
d.o.i: 10.1111/mmi.12342
PubMed: 3963450
PMC: 23888912

Coulthurst, S. J. (2013) The Type VI secretion system - a widespread and versatile cell targeting system. Research in microbiology. 164, 640-654
d.o.i: 10.1016/j.resmic.2013.03.017
PMC: 23542428

Dow, J. M., Gabel, F., Sargent, F. and Palmer, T. (2013) Characterization of a pre-export enzyme-chaperone complex on the twin-arginine transport pathway. Biochem J. 452, 57-66
d.o.i: 10.1042/BJ20121832
PubMed: 3635657
PMC: 23452237

Evans, R. M., Parkin, A., Roessler, M. M., Murphy, B. J., Adamson, H., Lukey, M. J., Sargent, F., Volbeda, A., Fontecilla-Camps, J. C. and Armstrong, F. A. (2013) Principles of sustained enzymatic hydrogen oxidation in the presence of oxygen--the crucial influence of high potential Fe-S clusters in the electron relay of [NiFe]-hydrogenases. Journal of the American Chemical Society. 135, 2694-2707
d.o.i: 10.1021/ja311055d
PMC: 23398301

Fang, W., Du, T., Raimi, O. G., Hurtado-Guerrero, R., Marino, K., Ibrahim, A. F., Albarbarawi, O., Ferguson, M. A., Jin, C. and Van Aalten, D. M. (2013) Genetic and structural validation of Aspergillus fumigatus N-acetylphosphoglucosamine mutase as an antifungal target. Bioscience reports. 33d.o.i: 10.1042/BSR20130053
PubMed: 3763426
PMC: 23844980

Fang, W., Du, T., Raimi, O. G., Hurtado-Guerrero, R., Urbaniak, M. D., Ibrahim, A. F., Ferguson, M. A., Jin, C. and van Aalten, D. M. (2013) Genetic and structural validation of Aspergillus fumigatus UDP-N-acetylglucosamine pyrophosphorylase as an antifungal target. Mol Microbiol. 89, 479-493
d.o.i: 10.1111/mmi.12290
PubMed: 3888555
PMC: 23750903

Fazli, M., McCarthy, Y., Givskov, M., Ryan, R. P. and Tolker-Nielsen, T. (2013) The exopolysaccharide gene cluster Bcam1330-Bcam1341 is involved in Burkholderia cenocepacia biofilm formation, and its expression is regulated by c-di-GMP and Bcam1349. MicrobiologyOpen. 2, 105-122
d.o.i: 10.1002/mbo3.61
PubMed: 3584217
PMC: 23281338

Ferreira, A. S., Silva, I. N., Oliveira, V. H., Becker, J. D., Givskov, M., Ryan, R. P., Fernandes, F. and Moreira, L. M. (2013) Comparative transcriptomic analysis of the Burkholderia cepacia tyrosine kinase bceF mutant reveals a role in tolerance to stress, biofilm formation, and virulence. Applied and environmental microbiology. 79, 3009-3020
d.o.i: 10.1128/AEM.00222-13
PubMed: 3623129
PMC: 23435894

Fritsch, M. J., Trunk, K., Diniz, J. A., Guo, M., Trost, M. and Coulthurst, S. J. (2013) Proteomic identification of novel secreted antibacterial toxins of the Serratia marcescens type VI secretion system. Molecular & cellular proteomics : MCP. 12, 2735-2749
d.o.i: 10.1074/mcp.M113.030502
PubMed: 3790287
PMC: 23842002

Fyans, J. K., Bignell, D., Loria, R., Toth, I. and Palmer, T. (2013) The ESX/type VII secretion system modulates development, but not virulence, of the plant pathogen Streptomyces scabies. Molecular plant pathology. 14, 119-130
d.o.i: 10.1111/j.1364-3703.2012.00835.x
PMC: 23009676

Hahne, H., Sobotzki, N., Nyberg, T., Helm, D., Borodkin, V. S., van Aalten, D. M. F., Agnew, B. and Kuster, B. (2013) Proteome Wide Purification and Identification of O-GlcNAc-Modified Proteins Using Click Chemistry and Mass Spectrometry. J Proteome Res. 12, 927-936
d.o.i: 10.1021/pr300967y
PMC: WOS:000314558800034

Harrison, M., Twomey, K., McCarthy, Y., O'Connell, O., Febrer, M., Alston, M., Ryan, R. and Plant, B. (2013) LSC 2013 abstract - The role of second-generation sequencing to characterize the fungal microbiota in the adult cystic fibrosis airway, and its correlation with standard culture-based methods and clinical phenotype. European Respiratory Journal. 42
PMC: WOS:000209370400584

Hobley, L., Ostrowski, A., Rao, F. V., Bromley, K. M., Porter, M., Prescott, A. R., MacPhee, C. E., van Aalten, D. M. and Stanley-Wall, N. R. (2013) BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm. Proc Natl Acad Sci U S A. 110, 13600-13605
d.o.i: 10.1073/pnas.1306390110
PubMed: 3746881
PMC: 23904481

James, M. J., Coulthurst, S. J., Palmer, T. and Sargent, F. (2013) Signal peptide etiquette during assembly of a complex respiratory enzyme. Mol Microbiol. 90, 400-414
d.o.i: 10.1111/mmi.12373
PMC: 23961722

Mariappa, D., Pathak, S. and van Aalten, D. M. (2013) A sweet TET-a-tete-synergy of TET proteins and O-GlcNAc transferase in transcription. The EMBO journal. 32, 612-613
d.o.i: 10.1038/emboj.2013.26
PubMed: 3590992
PMC: 23403924

Marlow, V. L., Maclean, T., Brown, H., Kiley, T. B. and Stanley-Wall, N. R. (2013) Blast a biofilm: a hands-on activity for school children and members of the public. J Microbiol Biol Educ. 14, 252-254
d.o.i: 10.1128/jmbe.v14i2.563
PubMed: 3867766
PMC: 24358392

O'Connell, A., An, S. Q., McCarthy, Y., Schulte, F., Niehaus, K., He, Y. Q., Tang, J. L., Ryan, R. P. and Dow, J. M. (2013) Proteomics analysis of the regulatory role of Rpf/DSF cell-to-cell signaling system in the virulence of Xanthomonas campestris. Molecular plant-microbe interactions : MPMI. 26, 1131-1137
d.o.i: 10.1094/MPMI-05-13-0155-R
PMC: 23819805

Ostrowski, A. and van Aalten, D. M. (2013) Chemical tools to probe cellular O-GlcNAc signalling. Biochem J. 456, 1-12
d.o.i: 10.1042/BJ20131081
PMC: 24156473

Rao, F. V., Schuttelkopf, A. W., Dorfmueller, H. C., Ferenbach, A. T., Navratilova, I. and van Aalten, D. M. (2013) Structure of a bacterial putative acetyltransferase defines the fold of the human O-GlcNAcase C-terminal domain. Open Biol. 3, 130021
d.o.i: 10.1098/rsob.130021
PubMed: 3814719
PMC: 24088714

Ryan, R. P. (2013) Cyclic di-GMP signalling and the regulation of bacterial virulence. Microbiology. 159, 1286-1297
d.o.i: 10.1099/mic.0.068189-0
PubMed: 3749722
PMC: 23704785

Sargent, F., Davidson, F. A., Kelly, C. L., Binny, R., Christodoulides, N., Gibson, D., Johansson, E., Kozyrska, K., Lado, L. L., Maccallum, J., Montague, R., Ortmann, B., Owen, R., Coulthurst, S. J., Dupuy, L., Prescott, A. R. and Palmer, T. (2013) A synthetic system for expression of components of a bacterial microcompartment. Microbiology. 159, 2427-2436
d.o.i: 10.1099/mic.0.069922-0
PubMed: 3836489
PMC: 24014666

Srikannathasan, V., English, G., Bui, N. K., Trunk, K., O'Rourke, P. E., Rao, V. A., Vollmer, W., Coulthurst, S. J. and Hunter, W. N. (2013) Structural basis for type VI secreted peptidoglycan DL-endopeptidase function, specificity and neutralization in Serratia marcescens. Acta crystallographica. Section D, Biological crystallography. 69, 2468-2482
d.o.i: 10.1107/S0907444913022725
PubMed: 3852654
PMC: 24311588

Striebeck, A., Robinson, D. A., Schuttelkopf, A. W. and van Aalten, D. M. (2013) Yeast Mnn9 is both a priming glycosyltransferase and an allosteric activator of mannan biosynthesis. Open Biol. 3, 130022
d.o.i: 10.1098/rsob.130022
PubMed: 3787745
PMC: 24026536

Twomey, K. B., Alston, M., An, S. Q., O'Connell, O. J., McCarthy, Y., Swarbreck, D., Febrer, M., Dow, J. M., Plant, B. J. and Ryan, R. P. (2013) Microbiota and metabolite profiling reveal specific alterations in bacterial community structure and environment in the cystic fibrosis airway during exacerbation. Plos One. 8, e82432
d.o.i: 10.1371/journal.pone.0082432
PubMed: 3866110
PMC: 24358183

Urbaniak, M. D., Collie, I. T., Fang, W., Aristotelous, T., Eskilsson, S., Raimi, O. G., Harrison, J., Navratilova, I. H., Frearson, J. A., van Aalten, D. M. and Ferguson, M. A. (2013) A novel allosteric inhibitor of the uridine diphosphate N-acetylglucosamine pyrophosphorylase from Trypanosoma brucei. ACS Chem Biol. 8, 1981-1987
d.o.i: 10.1021/cb400411x
PubMed: 3780468
PMC: 23834437

Volbeda, A., Darnault, C., Parkin, A., Sargent, F., Armstrong, F. A. and Fontecilla-Camps, J. C. (2013) Crystal structure of the O(2)-tolerant membrane-bound hydrogenase 1 from Escherichia coli in complex with its cognate cytochrome b. Structure. 21, 184-190
d.o.i: 10.1016/j.str.2012.11.010
PMC: 23260654

Zoltner, M., Fyfe, P. K., Palmer, T. and Hunter, W. N. (2013) Characterization of Staphylococcus aureus EssB, an integral membrane component of the Type VII secretion system: atomic resolution crystal structure of the cytoplasmic segment. Biochem J. 449, 469-477
d.o.i: 10.1042/BJ20121209
PubMed: 3526858
PMC: 23098276

Zoltner, M., Norman, D. G., Fyfe, P. K., El Mkami, H., Palmer, T. and Hunter, W. N. (2013) The architecture of EssB, an integral membrane component of the type VII secretion system. Structure. 21, 595-603
d.o.i: 10.1016/j.str.2013.02.007
PubMed: 3694306
PMC: 23499020