University of Dundee

Molecular Microbiology 2012

Bragonzi, A., Farulla, I., Paroni, M., Twomey, K. B., Pirone, L., Lore, N. I., Bianconi, I., Dalmastri, C., Ryan, R. P. and Bevivino, A. (2012) Modelling co-infection of the cystic fibrosis lung by Pseudomonas aeruginosa and Burkholderia cenocepacia reveals influences on biofilm formation and host response. Plos One. 7, e52330
d.o.i: 10.1371/journal.pone.0052330
PubMed: 3528780
PMC: 23284990

Caly, D. L., Coulthurst, S. J., Geoghegan, J. A., Malone, J. G. and Ryan, R. P. (2012) Socializing, networking and development: a report from the second 'Young Microbiologists Symposium on Microbe Signalling, Organization and Pathogenesis'. Mol Microbiol. 86, 501-512
d.o.i: 10.1111/mmi.12016
PMC: 22934780

Coulthurst, S. J., Dawson, A., Hunter, W. N. and Sargent, F. (2012) Conserved signal peptide recognition systems across the prokaryotic domains. Biochemistry. 51, 1678-1686
d.o.i: 10.1021/bi201852d
PubMed: 3290102
PMC: 22289056

Davidson, F. A., Seon-Yi, C. and Stanley-Wall, N. R. (2012) Selective heterogeneity in exoprotease production by Bacillus subtilis. Plos One. 7, e38574
d.o.i: 10.1371/journal.pone.0038574
PubMed: 3380070
PMC: 22745669

Dixon, M. J., Gray, A., Schenning, M., Agacan, M., Tempel, W., Tong, Y., Nedyalkova, L., Park, H. W., Leslie, N. R., van Aalten, D. M., Downes, C. P. and Batty, I. H. (2012) IQGAP proteins reveal an atypical phosphoinositide (aPI) binding domain with a pseudo C2 domain fold. J Biol Chem. 287, 22483-22496
d.o.i: 10.1074/jbc.M112.352773
PubMed: 3391087
PMC: 22493426

Dorfmueller, H. C., Fang, W., Rao, F. V., Blair, D. E., Attrill, H. and van Aalten, D. M. (2012) Structural and biochemical characterization of a trapped coenzyme A adduct of Caenorhabditis elegans glucosamine-6-phosphate N-acetyltransferase 1. Acta crystallographica. Section D, Biological crystallography. 68, 1019-1029
d.o.i: 10.1107/S0907444912019592
PubMed: 3413214
PMC: 22868768

English, G., Trunk, K., Rao, V. A., Srikannathasan, V., Hunter, W. N. and Coulthurst, S. J. (2012) New secreted toxins and immunity proteins encoded within the Type VI secretion system gene cluster of Serratia marcescens. Mol Microbiol. 86, 921-936
d.o.i: 10.1111/mmi.12028
PubMed: 3533786
PMC: 22957938

Fritsch, M. J., Krehenbrink, M., Tarry, M. J., Berks, B. C. and Palmer, T. (2012) Processing by rhomboid protease is required for Providencia stuartii TatA to interact with TatC and to form functional homo-oligomeric complexes. Mol Microbiol. 84, 1108-1123
d.o.i: 10.1111/j.1365-2958.2012.08080.x
PubMed: 3712462
PMC: 22591141

Gerc, A. J., Song, L., Challis, G. L., Stanley-Wall, N. R. and Coulthurst, S. J. (2012) The insect pathogen Serratia marcescens Db10 uses a hybrid non-ribosomal peptide synthetase-polyketide synthase to produce the antibiotic althiomycin. Plos One. 7, e44673
d.o.i: 10.1371/journal.pone.0044673
PubMed: 3445576
PMC: 23028578

Grahl, S., Maillard, J., Spronk, C. A., Vuister, G. W. and Sargent, F. (2012) Overlapping transport and chaperone-binding functions within a bacterial twin-arginine signal peptide. Mol Microbiol. 83, 1254-1267
d.o.i: 10.1111/j.1365-2958.2012.08005.x
PubMed: 3712460
PMC: 22329966

Keller, R., de Keyzer, J., Driessen, A. J. and Palmer, T. (2012) Co-operation between different targeting pathways during integration of a membrane protein. J Cell Biol. 199, 303-315
d.o.i: 10.1083/jcb.201204149
PubMed: 3471235
PMC: 23045547

Kneuper, H., Maldonado, B., Jager, F., Krehenbrink, M., Buchanan, G., Keller, R., Muller, M., Berks, B. C. and Palmer, T. (2012) Molecular dissection of TatC defines critical regions essential for protein transport and a TatB-TatC contact site. Mol Microbiol. 85, 945-961
d.o.i: 10.1111/j.1365-2958.2012.08151.x
PubMed: 3712464
PMC: 22742417

Kneuper, H., Maldonado, B., Jager, F., Krehenbrink, M., Buchanan, G., Keller, R., Muller, M., Berks, B. C. and Palmer, T. (2012) Molecular dissection of TatC defines critical regions essential for protein transport and a TatB-TatC contact site. Mol Microbiol. 85, 945-961
d.o.i: 10.1111/j.1365-2958.2012.08151.x
PubMed: 3712464
PMC: 22742417

Koch, S., Fritsch, M. J., Buchanan, G. and Palmer, T. (2012) Escherichia coli TatA and TatB proteins have N-out, C-in topology in intact cells. J Biol Chem. 287, 14420-14431
d.o.i: 10.1074/jbc.M112.354555
PubMed: 3340247
PMC: 22399293

Lossi, N. S., Manoli, E., Simpson, P., Jones, C., Hui, K., Dajani, R., Coulthurst, S. J., Freemont, P. and Filloux, A. (2012) The archetype Pseudomonas aeruginosa proteins TssB and TagJ form a novel subcomplex in the bacterial type VI secretion system. Mol Microbiol. 86, 437-456
d.o.i: 10.1111/j.1365-2958.2012.08204.x
PMC: 22906320

Lu, X. H., An, S. Q., Tang, D. J., McCarthy, Y., Tang, J. L., Dow, J. M. and Ryan, R. P. (2012) RsmA regulates biofilm formation in Xanthomonas campestris through a regulatory network involving cyclic di-GMP and the Clp transcription factor. Plos One. 7, e52646
d.o.i: 10.1371/journal.pone.0052646
PubMed: 3528676
PMC: 23285129

McLaughlin, H. P., Caly, D. L., McCarthy, Y., Ryan, R. P. and Dow, J. M. (2012) An orphan chemotaxis sensor regulates virulence and antibiotic tolerance in the human pathogen Pseudomonas aeruginosa. Plos One. 7, e42205
d.o.i: 10.1371/journal.pone.0042205
PubMed: 3411652
PMC: 22870303

Palmer, T. and Berks, B. C. (2012) The twin-arginine translocation (Tat) protein export pathway. Nature reviews. Microbiology. 10, 483-496
d.o.i: 10.1038/nrmicro2814
PMC: 22683878

Parkin, A., Bowman, L., Roessler, M. M., Davies, R. A., Palmer, T., Armstrong, F. A. and Sargent, F. (2012) How Salmonella oxidises H(2) under aerobic conditions. FEBS Lett. 586, 536-544
d.o.i: 10.1016/j.febslet.2011.07.044
PMC: 21827758

Parkin, A. and Sargent, F. (2012) The hows and whys of aerobic H2 metabolism. Current opinion in chemical biology. 16, 26-34
d.o.i: 10.1016/j.cbpa.2012.01.012
PMC: 22366384

Pathak, S., Borodkin, V. S., Albarbarawi, O., Campbell, D. G., Ibrahim, A. and van Aalten, D. M. (2012) O-GlcNAcylation of TAB1 modulates TAK1-mediated cytokine release. The EMBO journal. 31, 1394-1404
d.o.i: 10.1038/emboj.2012.8
PubMed: 3321193
PMC: 22307082

Penman, G. A., Lockhart, D. E., Ferenbach, A. and van Aalten, D. M. (2012) Purification, crystallization and preliminary X-ray diffraction data of UDP-galactopyranose mutase from Aspergillus fumigatus. Acta crystallographica. Section F, Structural biology and crystallization communications. 68, 705-708
d.o.i: 10.1107/S1744309112017915
PubMed: 3370916
PMC: 22684076

Pinske, C., Jaroschinsky, M., Sargent, F. and Sawers, G. (2012) Zymographic differentiation of [NiFe]-hydrogenases 1, 2 and 3 of Escherichia coli K-12. BMC Microbiol. 12, 134
d.o.i: 10.1186/1471-2180-12-134
PubMed: 3431244
PMC: 22769583

Pinske, C., McDowall, J. S., Sargent, F. and Sawers, R. G. (2012) Analysis of hydrogenase 1 levels reveals an intimate link between carbon and hydrogen metabolism in Escherichia coli K-12. Microbiology. 158, 856-868
d.o.i: 10.1099/mic.0.056622-0
PMC: 22241049

Rollauer, S. E., Tarry, M. J., Graham, J. E., Jaaskelainen, M., Jager, F., Johnson, S., Krehenbrink, M., Liu, S. M., Lukey, M. J., Marcoux, J., McDowell, M. A., Rodriguez, F., Roversi, P., Stansfeld, P. J., Robinson, C. V., Sansom, M. S., Palmer, T., Hogbom, M., Berks, B. C. and Lea, S. M. (2012) Structure of the TatC core of the twin-arginine protein transport system. Nature. 492, 210-214
d.o.i: 10.1038/nature11683
PubMed: 3573685
PMC: 23201679

Ryan, R. P., McCarthy, Y., Kiely, P. A., O'Connor, R., Farah, C. S., Armitage, J. P. and Dow, J. M. (2012) Dynamic complex formation between HD-GYP, GGDEF and PilZ domain proteins regulates motility in Xanthomonas campestris. Mol Microbiol. 86, 557-567
d.o.i: 10.1111/mmi.12000
PMC: 22924852

Ryan, R. P., Tolker-Nielsen, T. and Dow, J. M. (2012) When the PilZ don't work: effectors for cyclic di-GMP action in bacteria. Trends in Microbiology. 20, 235-242
d.o.i: 10.1016/j.tim.2012.02.008
PMC: WOS:000303964000006

Schimpl, M., Borodkin, V. S., Gray, L. J. and van Aalten, D. M. (2012) Synergy of peptide and sugar in O-GlcNAcase substrate recognition. Chemistry & biology. 19, 173-178
d.o.i: 10.1016/j.chembiol.2012.01.011
PubMed: 3476531
PMC: 22365600

Schimpl, M., Rush, C. L., Betou, M., Eggleston, I. M., Recklies, A. D. and van Aalten, D. M. (2012) Human YKL-39 is a pseudo-chitinase with retained chitooligosaccharide-binding properties. Biochem J. 446, 149-157
d.o.i: 10.1042/BJ20120377
PubMed: 3513709
PMC: 22742450

Schimpl, M., Zheng, X., Borodkin, V. S., Blair, D. E., Ferenbach, A. T., Schuttelkopf, A. W., Navratilova, I., Aristotelous, T., Albarbarawi, O., Robinson, D. A., Macnaughtan, M. A. and van Aalten, D. M. (2012) O-GlcNAc transferase invokes nucleotide sugar pyrophosphate participation in catalysis. Nat Chem Biol. 8, 969-974
d.o.i: 10.1038/nchembio.1108
PubMed: 3509171
PMC: 23103942

Terra, R., Stanley-Wall, N. R., Cao, G. and Lazazzera, B. A. (2012) Identification of Bacillus subtilis SipW as a bifunctional signal peptidase that controls surface-adhered biofilm formation. J Bacteriol. 194, 2781-2790
d.o.i: 10.1128/JB.06780-11
PubMed: 3370629
PMC: 22328672

Twomey, K. B., O'Connell, O. J., McCarthy, Y., Dow, J. M., O'Toole, G. A., Plant, B. J. and Ryan, R. P. (2012) Bacterial cis-2-unsaturated fatty acids found in the cystic fibrosis airway modulate virulence and persistence of Pseudomonas aeruginosa. The ISME journal. 6, 939-950
d.o.i: 10.1038/ismej.2011.167
PubMed: 3329111
PMC: 22134647

Willemse, J., Ruban-Osmialowska, B., Widdick, D., Celler, K., Hutchings, M. I., van Wezel, G. P. and Palmer, T. (2012) Dynamic localization of Tat protein transport machinery components in Streptomyces coelicolor. J Bacteriol. 194, 6272-6281
d.o.i: 10.1128/JB.01425-12
PubMed: 3486365
PMC: 23002216

Wong, E., Vaaje-Kolstad, G., Ghosh, A., Hurtado-Guerrero, R., Konarev, P. V., Ibrahim, A. F., Svergun, D. I., Eijsink, V. G., Chatterjee, N. S. and van Aalten, D. M. (2012) The Vibrio cholerae colonization factor GbpA possesses a modular structure that governs binding to different host surfaces. PLoS Pathog. 8, e1002373
d.o.i: 10.1371/journal.ppat.1002373
PubMed: 3257281
PMC: 22253590